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    LOC4328601 leucine-rich repeat receptor protein kinase MSL1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328601, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4328601
    Gene description
    leucine-rich repeat receptor protein kinase MSL1-like
    Locus tag
    OSNPB_020194400
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    MSL1; OsJ_05738
    Expression
    Broad expression in flowers (RPKM 1.2), milk grains (RPKM 1.1) and 6 other tissues See more
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    Genomic context

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    See LOC4328601 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (5270449..5278257, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (5259821..5267629, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene U2 spliceosomal RNA Neighboring gene zinc finger CCCH domain-containing protein 14-like Neighboring gene non-structural maintenance of chromosomes element 4 homolog A Neighboring gene protein STRUBBELIG-RECEPTOR FAMILY 8 Neighboring gene lipoxygenase 2.3, chloroplastic Neighboring gene uncharacterized LOC4328604

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    leucine-rich repeat receptor protein kinase MSL1
    Names
    LOC_Os02g10100
    MSP1 protein homolog 1
    MSP1-like protein 1
    P0437H03.136
    leucine-rich repeat receptor protein kinase EXS
    putative extra sporogenous cells
    putative leucine-rich repeat receptor protein kinase EXS
    NP_001396311.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001409382.1 → NP_001396311.1  leucine-rich repeat receptor protein kinase MSL1 precursor

      Status: VALIDATED

      Source sequence(s)
      AP014958

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      5270449..5278257 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7F8Q9.1 GenPept UniProtKB/Swiss-Prot:Q7F8Q9

    Gene LinkOut

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