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    LOC4344486 uncharacterized acetyltransferase At3g50280 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344486, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4344486
    Gene description
    uncharacterized acetyltransferase At3g50280
    Locus tag
    OSNPB_080111300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0498H04.4
    Expression
    Biased expression in roots before flowering (RPKM 24.0), leaves after flowering (RPKM 3.1) and 1 other tissue See more
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    Genomic context

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    See LOC4344486 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (599801..603496, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (594421..598143, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9266838 Neighboring gene uncharacterized LOC4344485 Neighboring gene uncharacterized acetyltransferase At3g50280 Neighboring gene uncharacterized acetyltransferase At3g50280-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized acetyltransferase At3g50280
    Names
    Os08g0111300
    P0007D08.43
    putative AER

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      599801..603496 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015793016.3 → XP_015648502.1  uncharacterized acetyltransferase At3g50280

      UniProtKB/TrEMBL
      A2YQK2, A3BNZ4, Q6ZC51, Q6ZCD8
      Conserved Domains (1) summary
      pfam02458
      Location:16 → 471
      Transferase; Transferase family
    Nucleotide Protein
    Heading Accession and Version

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