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    LOC4334869 transcriptional corepressor LEUNIG_HOMOLOG [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334869, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4334869
    Gene description
    transcriptional corepressor LEUNIG_HOMOLOG
    Locus tag
    OSNPB_030860900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 18.1), leaves after flowering (RPKM 15.2) and 6 other tissues See more
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    Genomic context

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    See LOC4334869 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (37319139..37325456)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (36340082..36346469)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene ethylene-response factor C3 Neighboring gene DIBOA-glucoside dioxygenase BX6 Neighboring gene myosin-6 Neighboring gene uncharacterized LOC4334870 Neighboring gene COP1-interacting protein 7 Neighboring gene probable aquaporin PIP2-8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription corepressor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcriptional corepressor LEUNIG_HOMOLOG
    Names
    Os03g0860900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      37319139..37325456
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015775318.3 → XP_015630804.1  transcriptional corepressor LEUNIG_HOMOLOG

      UniProtKB/TrEMBL
      A0A8J8XZI4, B8AP65, B9F807, Q0DLJ8, Q10A93
      Conserved Domains (3) summary
      cd00200
      Location:462 → 743
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:465 → 502
      7WD40; WD40 repeat [structural motif]
      pfam08513
      Location:11 → 35
      LisH
    Nucleotide Protein
    Heading Accession and Version

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