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    LOC4347845 protein STRUBBELIG-RECEPTOR FAMILY 5 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347845, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4347845
    Gene description
    protein STRUBBELIG-RECEPTOR FAMILY 5
    Locus tag
    OSNPB_090559900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1065_E04.21
    Expression
    Biased expression in flower buds (RPKM 10.0) and flowers (RPKM 6.2) See more
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    Genomic context

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    See LOC4347845 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (26688336..26693429)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (22243638..22248962)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene thioredoxin H2-2-like Neighboring gene uncharacterized LOC9267744 Neighboring gene organic cation/carnitine transporter 7 Neighboring gene TORTIFOLIA1-like protein 2 Neighboring gene 26S proteasome regulatory subunit 6B homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein STRUBBELIG-RECEPTOR FAMILY 5
    Names
    Os09g0559900
    putative leucine-rich repeat transmembrane protein kinase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      26688336..26693429
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795957.3 → XP_015651443.1  protein STRUBBELIG-RECEPTOR FAMILY 5 isoform X1

      UniProtKB/TrEMBL
      A0A0P0XQI1, Q0IZN0
      Conserved Domains (4) summary
      PLN00113
      Location:99 → 672
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      sd00033
      Location:101 → 124
      LRR_RI; leucine-rich repeat [structural motif]
      pfam08263
      Location:54 → 97
      LRRNT_2; Leucine rich repeat N-terminal domain
      cl21453
      Location:412 → 674
      PKc_like; Protein Kinases, catalytic domain

    2. XM_015795958.3 → XP_015651444.1  protein STRUBBELIG-RECEPTOR FAMILY 5 isoform X2

      UniProtKB/TrEMBL
      B9G516
      Conserved Domains (5) summary
      cd00116
      Location:77 → 169
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:54 → 77
      LRR_RI; leucine-rich repeat [structural motif]
      pfam00069
      Location:313 → 578
      Pkinase; Protein kinase domain
      pfam13855
      Location:78 → 136
      LRR_8; Leucine rich repeat
      cl21453
      Location:319 → 581
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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