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    LOC4325687 delta(7)-sterol-C5(6)-desaturase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325687, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4325687
    Gene description
    delta(7)-sterol-C5(6)-desaturase
    Locus tag
    OSNPB_010134500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4325687 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (1896176..1899911)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (1888468..1892260)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene probable leucine-rich repeat receptor-like protein kinase At1g68400 Neighboring gene uncharacterized LOC9268840 Neighboring gene protein SAR DEFICIENT 1 Neighboring gene endo-1,4-beta-xylanase 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables C-5 sterol desaturase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in sterol biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    delta(7)-sterol-C5(6)-desaturase
    Names
    OSJNBa0083M16.29
    Os01g0134500
    putative sterol-C5(6)-desaturase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      1896176..1899911
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765414.3 → XP_015620900.1  delta(7)-sterol-C5(6)-desaturase

      UniProtKB/TrEMBL
      A0A8J8Y1W9, A2WKC6, A2ZNY8, Q0JQX0, Q5ZCK9
      Conserved Domains (1) summary
      pfam04116
      Location:133 → 263
      FA_hydroxylase; Fatty acid hydroxylase superfamily
    Nucleotide Protein
    Heading Accession and Version

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