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    LOC4336492 short-chain dehydrogenase/reductase 2b [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336492, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4336492
    Gene description
    short-chain dehydrogenase/reductase 2b
    Locus tag
    OSNPB_040531700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4336492 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (27083508..27086374)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (26580066..26582932)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene L-type lectin-domain containing receptor kinase SIT2-like Neighboring gene L-type lectin-domain containing receptor kinase SIT2-like Neighboring gene salutaridine reductase Neighboring gene uncharacterized LOC107280751

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    short-chain dehydrogenase/reductase 2b
    Names
    Os04g0531700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      27083508..27086374
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015780111.1 → XP_015635597.1  short-chain dehydrogenase/reductase 2b isoform X1

      Conserved Domains (2) summary
      pfam00106
      Location:102 → 360
      adh_short; short chain dehydrogenase
      cl21454
      Location:102 → 395
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins

    2. XM_015780112.1 → XP_015635598.1  short-chain dehydrogenase/reductase 2b isoform X2

      Conserved Domains (2) summary
      pfam00106
      Location:99 → 357
      adh_short; short chain dehydrogenase
      cl21454
      Location:99 → 392
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
    Nucleotide Protein
    Heading Accession and Version

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