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    LOC4347471 KH domain-containing protein HEN4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347471, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4347471
    Gene description
    KH domain-containing protein HEN4
    Locus tag
    OSNPB_090498600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4347471 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (23690633..23696871)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (19279848..19286066)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene thaumatin-like protein 1b Neighboring gene uncharacterized LOC136351753 Neighboring gene probable sarcosine oxidase Neighboring gene uncharacterized LOC4347472 Neighboring gene protein MANNAN SYNTHESIS-RELATED 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    KH domain-containing protein HEN4
    Names
    Os09g0498600
    poly(rC)-binding protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      23690633..23696871
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015757192.3 → XP_015612678.1  KH domain-containing protein HEN4

      UniProtKB/TrEMBL
      A0A0N7KR20, B8BD38
      Conserved Domains (2) summary
      pfam03154
      Location:425 → 523
      Atrophin-1; Atrophin-1 family
      cl00098
      Location:329 → 401
      KH-I; K homology (KH) RNA-binding domain, type I

    RNA

    1. XR_003238567.2 RNA Sequence

    2. XR_003238569.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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