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    LOC4327741 transcription and mRNA export factor ENY2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327741, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4327741
    Gene description
    transcription and mRNA export factor ENY2
    Locus tag
    OSNPB_010920200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    B1793G04.6
    Expression
    Ubiquitous expression in flower buds (RPKM 29.9), flowers (RPKM 27.0) and 6 other tissues See more
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    Genomic context

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    See LOC4327741 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (40805577..40808009, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (40170921..40174518, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene CBS domain-containing protein CBSX6 Neighboring gene uncharacterized protein At3g27210 Neighboring gene uncharacterized LOC4327742 Neighboring gene dynamin-related protein 3A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coactivator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in poly(A)+ mRNA export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of DUBm complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of SAGA complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of nuclear pore IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription and mRNA export factor ENY2
    Names
    Os01g0920200
    P0678F11.33
    transcription and mRNA export factor SUS1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      40805577..40808009 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015762492.3 → XP_015617978.1  transcription and mRNA export factor ENY2 isoform X1

      UniProtKB/TrEMBL
      A0A0P0VC73, Q0JGJ6
      Conserved Domains (1) summary
      pfam10163
      Location:52 → 130
      EnY2; Transcription factor e(y)2

    2. XM_066306735.1 → XP_066162832.1  transcription and mRNA export factor ENY2 isoform X2

    Nucleotide Protein
    Heading Accession and Version

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