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    LOC4337902 probable E3 ubiquitin-protein ligase RHG1A [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337902, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4337902
    Gene description
    probable E3 ubiquitin-protein ligase RHG1A
    Locus tag
    OSNPB_050163400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4337902 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (3737162..3744269, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (3718277..3725421, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene pre-mRNA-processing-splicing factor 8A Neighboring gene fasciclin-like arabinogalactan protein 11 Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 Neighboring gene acyl-coenzyme A oxidase 4, peroxisomal

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable E3 ubiquitin-protein ligase RHG1A
    Names
    Os05g0163400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      3737162..3744269 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015783891.3 → XP_015639377.1  probable E3 ubiquitin-protein ligase RHG1A isoform X2

      UniProtKB/TrEMBL
      A0A0P0WI85, B9FMM2, Q75IR3
      Conserved Domains (2) summary
      COG5422
      Location:112 → 358
      ROM1; RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
      cl17238
      Location:482 → 526
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    2. XM_015783889.3 → XP_015639375.1  probable E3 ubiquitin-protein ligase RHG1A isoform X1

      UniProtKB/TrEMBL
      B9FMM2
      Conserved Domains (2) summary
      pfam12678
      Location:505 → 552
      zf-rbx1; RING-H2 zinc finger
      pfam13639
      Location:511 → 552
      zf-RING_2; Ring finger domain

    3. XM_066310445.1 → XP_066166542.1  probable E3 ubiquitin-protein ligase RHG1A isoform X2

      UniProtKB/TrEMBL
      A0A0P0WI85, B9FMM2, Q75IR3

    4. XM_015783887.3 → XP_015639373.1  probable E3 ubiquitin-protein ligase RHG1A isoform X1

      UniProtKB/TrEMBL
      B9FMM2
      Conserved Domains (2) summary
      pfam12678
      Location:505 → 552
      zf-rbx1; RING-H2 zinc finger
      pfam13639
      Location:511 → 552
      zf-RING_2; Ring finger domain

    5. XM_066310446.1 → XP_066166543.1  probable E3 ubiquitin-protein ligase RHG1A isoform X2

      UniProtKB/TrEMBL
      A0A0P0WI85, B9FMM2, Q75IR3

    6. XM_015783886.3 → XP_015639372.1  probable E3 ubiquitin-protein ligase RHG1A isoform X1

      UniProtKB/TrEMBL
      B9FMM2
      Conserved Domains (2) summary
      pfam12678
      Location:505 → 552
      zf-rbx1; RING-H2 zinc finger
      pfam13639
      Location:511 → 552
      zf-RING_2; Ring finger domain

    7. XM_066310447.1 → XP_066166544.1  probable E3 ubiquitin-protein ligase RHG1A isoform X2

      UniProtKB/TrEMBL
      A0A0P0WI85, B9FMM2, Q75IR3

    8. XM_066310444.1 → XP_066166541.1  probable E3 ubiquitin-protein ligase RHG1A isoform X1

      UniProtKB/TrEMBL
      B9FMM2
    Nucleotide Protein
    Heading Accession and Version

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