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    LOC4325906 protein CONSERVED ONLY IN THE GREEN LINEAGE 160, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325906, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4325906
    Gene description
    protein CONSERVED ONLY IN THE GREEN LINEAGE 160, chloroplastic
    Locus tag
    OSNPB_010673800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 207.7), roots after flowering (RPKM 100.8) and 4 other tissues See more
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    Genomic context

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    See LOC4325906 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (28263977..28268829, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (27677195..27681555, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene F-box/kelch-repeat protein At3g18720 Neighboring gene ubiquitin-conjugating enzyme E2 36 Neighboring gene dof zinc finger protein 5-like Neighboring gene E3 ubiquitin ligase BIG BROTHER-related Neighboring gene trihelix transcription factor ENAP2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    protein CONSERVED ONLY IN THE GREEN LINEAGE 160, chloroplastic
    Names
    Os01g0673800
    P0007F06.35-2
    P0485G01.25-2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      28263977..28268829 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066306929.1 → XP_066163026.1  protein CONSERVED ONLY IN THE GREEN LINEAGE 160, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0V6F5, A2ZWG0, Q5QMQ3

    RNA

    1. XR_010738954.1 RNA Sequence

    2. XR_001541983.3 RNA Sequence

    3. XR_001541981.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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