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    LOC4325115 putative disease resistance protein RGA1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325115, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4325115
    Gene description
    putative disease resistance protein RGA1
    Locus tag
    OSNPB_010260500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4325115 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (8763257..8767638)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (8747129..8755448)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At5g56310 Neighboring gene kinesin-like protein KIN-14B Neighboring gene uncharacterized LOC112938360 Neighboring gene transcription factor Pur-alpha 1 Neighboring gene protein CASPARIAN STRIP INTEGRITY FACTOR 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to fungus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative disease resistance protein RGA1
    Names
    NBS-LRR disease resistance protein -like
    NBS-LRR protein
    Os01g0260500
    P0699D11.16

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      8763257..8767638
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026024453.2 → XP_025880238.1  putative disease resistance protein RGA1

      UniProtKB/TrEMBL
      A2WN34, A2ZRG7, Q9LG50
      Conserved Domains (5) summary
      sd00033
      Location:574 → 596
      LRR_RI; leucine-rich repeat [structural motif]
      sd00034
      Location:1021 → 1043
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam00931
      Location:186 → 453
      NB-ARC; NB-ARC domain
      cl26396
      Location:2 → 111
      RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
      cl27891
      Location:184 → 884
      LRR_3; Leucine Rich Repeat
    Nucleotide Protein
    Heading Accession and Version

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