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    PTPN12 protein tyrosine phosphatase non-receptor type 12 [ Apteryx rowi (Okarito brown kiwi) ]

    Gene ID: 112967021, updated on 15-Mar-2024

    Summary

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    Gene symbol
    PTPN12
    Gene description
    protein tyrosine phosphatase non-receptor type 12
    See related
    Ensembl:ENSARWG00000008365
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Apteryx rowi
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Apterygiformes; Apterygidae; Apteryx
    Orthologs
    human mouse all
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    Genomic context

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    See PTPN12 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    100 current aptRow1 (GCF_003343035.1) Unplaced Scaffold NW_020448986.1 (481521..531128)

    NW_020448986.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 146 Neighboring gene fibrinogen like 2 Neighboring gene gamma-secretase activating protein Neighboring gene uncharacterized LOC112967020 Neighboring gene round spermatid basic protein 1 like Neighboring gene transmembrane protein 60

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_020448986 Unplaced Scaffold Reference aptRow1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables non-membrane spanning protein tyrosine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in peptidyl-tyrosine dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tyrosine-protein phosphatase non-receptor type 12

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Apteryx rowi Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference aptRow1

    Genomic

    1. NW_020448986.1 Reference aptRow1

      Range
      481521..531128
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026067698.1 → XP_025923483.1  tyrosine-protein phosphatase non-receptor type 12 isoform X2

      Related
      ENSARWP00000012112.1, ENSARWT00000013795.1
      Conserved Domains (2) summary
      cd00047
      Location:1 → 173
      PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
      cl26305
      Location:330 → 584
      XPG_I; XPG I-region

    2. XM_026067699.1 → XP_025923484.1  tyrosine-protein phosphatase non-receptor type 12 isoform X3

      Conserved Domains (2) summary
      cl21483
      Location:1 → 67
      PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
      cl26305
      Location:201 → 455
      XPG_I; XPG I-region

    3. XM_026067696.1 → XP_025923481.1  tyrosine-protein phosphatase non-receptor type 12 isoform X1

      Conserved Domains (2) summary
      cl26305
      Location:238 → 492
      XPG_I; XPG I-region
      cl27757
      Location:1 → 81
      Y_phosphatase; Protein-tyrosine phosphatase
    Nucleotide Protein
    Heading Accession and Version

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