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    TRAF6 TNF receptor associated factor 6 [ Apteryx rowi (Okarito brown kiwi) ]

    Gene ID: 112960908, updated on 15-Mar-2024

    Summary

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    Gene symbol
    TRAF6
    Gene description
    TNF receptor associated factor 6
    See related
    Ensembl:ENSARWG00000002592
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Apteryx rowi
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Apterygiformes; Apterygidae; Apteryx
    Orthologs
    human mouse all
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    Genomic context

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    See TRAF6 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    100 current aptRow1 (GCF_003343035.1) Unplaced Scaffold NW_020447464.1 (1526394..1548490)

    NW_020447464.1Genomic Context describing neighboring genes Neighboring gene intraflagellar transport associated protein Neighboring gene recombination activating 2 Neighboring gene recombination activating 1 Neighboring gene proline rich 5 like Neighboring gene uncharacterized LOC112960909

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_020447464 Unplaced Scaffold Reference aptRow1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables tumor necrosis factor receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in interleukin-1-mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of JNK cascade IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of NF-kappaB transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein K63-linked ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of canonical NF-kappaB signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in tumor necrosis factor-mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of plasma membrane signaling receptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    TNF receptor-associated factor 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Apteryx rowi Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference aptRow1

    Genomic

    1. NW_020447464.1 Reference aptRow1

      Range
      1526394..1548490
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026055586.1 → XP_025911371.1  TNF receptor-associated factor 6

      Conserved Domains (4) summary
      cd03776
      Location:374 → 522
      MATH_TRAF6; Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter ...
      pfam02176
      Location:204 → 261
      zf-TRAF; TRAF-type zinc finger
      cd16643
      Location:67 → 124
      mRING-HC-C3HC3D_TRAF6; Modified RING finger, HC subclass (C3HC3D-type), found in tumor necrosis factor (TNF) receptor-associated factor 6 (TRAF6) and similar proteins
      cl27293
      Location:132 → 242
      UFD1; Ubiquitin fusion degradation protein UFD1

    2. XM_026055585.1 → XP_025911370.1  TNF receptor-associated factor 6

      Related
      ENSARWP00000003453.1, ENSARWT00000004023.1
      Conserved Domains (4) summary
      cd03776
      Location:374 → 522
      MATH_TRAF6; Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter ...
      pfam02176
      Location:204 → 261
      zf-TRAF; TRAF-type zinc finger
      cd16643
      Location:67 → 124
      mRING-HC-C3HC3D_TRAF6; Modified RING finger, HC subclass (C3HC3D-type), found in tumor necrosis factor (TNF) receptor-associated factor 6 (TRAF6) and similar proteins
      cl27293
      Location:132 → 242
      UFD1; Ubiquitin fusion degradation protein UFD1

    RNA

    1. XR_003251883.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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