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    LOC4325001 MADS-box transcription factor 2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325001, updated on 16-Jul-2024

    Summary

    Gene symbol
    LOC4325001
    Gene description
    MADS-box transcription factor 2-like
    Locus tag
    OSNPB_010883100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    PI2; MADS; MADS2; NMADS1; OsMADS2; RMADS219; OsJ_04312
    Expression
    Biased expression in flowers (RPKM 179.3), flower buds (RPKM 66.7) and 1 other tissue See more
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    Genomic context

    See LOC4325001 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (38951488..38954222, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (38321340..38324077, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene protein DMP7 Neighboring gene NAD(P)H-quinone oxidoreductase subunit N, chloroplastic Neighboring gene amino acid permease 4 Neighboring gene probable receptor-like protein kinase At1g11050 Neighboring gene ubinuclein-1 Neighboring gene uncharacterized LOC136354780

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Pathways from PubChem

    General protein information

    Preferred Names
    mADS-box transcription factor 2
    Names
    B1065E10.30
    LOC_Os01g66030
    MADS box protein
    MADS-box protein RMADS219
    MADS-box transcription factor 2
    PISTILLATA-like MADS-box transcription factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001416350.1NP_001403279.1  mADS-box transcription factor 2

      Status: VALIDATED

      Source sequence(s)
      AY551924, CI599768
      UniProtKB/Swiss-Prot
      Q0JH52, Q40702, Q6Q9H8, Q7F2L5, Q9AUJ1
      UniProtKB/TrEMBL
      A2WXN3, M1EC06

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      38951488..38954222 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015768509.3XP_015623995.1  mADS-box transcription factor 2 isoform X1

      UniProtKB/TrEMBL
      M1EC06
      Conserved Domains (2) summary
      cd00265
      Location:280
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
      pfam01486
      Location:83163
      K-box; K-box region