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    L105_gp1 polyprotein [ Rodent pegivirus ]

    Gene ID: 15382983, updated on 16-Aug-2018

    Summary

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    Gene symbol
    L105_gp1
    Gene description
    polyprotein
    Locus tag
    L105_gp1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rodent pegivirus (isolate: CC61, nat-host: Neotoma lepida)
    Lineage
    Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Pegivirus; unclassified Pegivirus
    Old locus tag
    RPgV_gp1
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    Genomic context

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    Sequence:
    NC_021154.1 (350..10804)

    NC_021154.1Genomic Context describing neighboring genes

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_021154.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of rodent homologs of hepatitis C virus and pegiviruses. Kapoor A, et al. mBio, 2013 Apr 9. PMID 23572554, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    polyprotein
    Names
    putative signal peptide
    putative Y protein
    putative E1 protein
    putative E2 protein
    putative X protein
    putative NS2 protein
    putative NS3 protein
    putative NS4A protein
    putative NS4B protein
    putative NS5A protein
    putative NS5B protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_021154.1 Reference assembly

      Range
      350..10804
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_007905734.1 polyprotein [Rodent pegivirus]

      See identical proteins and their annotated locations for YP_007905734.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      M9V357
      Conserved Domains (10) summary
      pfam01001
      Location:2052 → 2203
      HCV_NS4b; Hepatitis C virus non-structural protein NS4b
      pfam02907
      Location:1304 → 1452
      Peptidase_S29; Hepatitis C virus NS3 protease
      pfam12786
      Location:443 → 591
      GBV-C_env; GB virus C genotype envelope
      pfam01538
      Location:1053 → 1251
      HCV_NS2; Hepatitis C virus non-structural protein NS2
      smart00487
      Location:1467 → 1603
      DEXDc; DEAD-like helicases superfamily
      cd00046
      Location:1476 → 1601
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam00998
      Location:2920 → 3413
      RdRP_3; Viral RNA dependent RNA polymerase
      pfam08300
      Location:2287 → 2349
      HCV_NS5a_1a; Hepatitis C virus non-structural 5a zinc finger domain
      pfam10101
      Location:845 → 1152
      DUF2339; Predicted membrane protein (DUF2339)
      cl21455
      Location:1630 → 1750
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    2. YP_007905973.1 putative signal peptide

    3. YP_007905974.1 putative Y protein

    4. YP_007905975.1 putative E1 protein

    5. YP_007905976.1 putative E2 protein

      Conserved Domains (1) summary
      pfam12786
      Location:31 → 179
      GBV-C_env; GB virus C genotype envelope

    6. YP_007905977.1 putative X protein

    7. YP_007905978.1 putative NS2 protein

      Conserved Domains (1) summary
      pfam01538
      Location:21 → 219
      HCV_NS2; Hepatitis C virus non-structural protein NS2

    8. YP_007905979.1 putative NS3 protein

      Conserved Domains (4) summary
      pfam02907
      Location:31 → 179
      Peptidase_S29; Hepatitis C virus NS3 protease
      smart00487
      Location:194 → 330
      DEXDc; DEAD-like helicases superfamily
      cd00046
      Location:203 → 328
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      cl21455
      Location:357 → 477
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    9. YP_007905980.1 putative NS4A protein

    10. YP_007905981.1 putative NS4B protein

      Conserved Domains (1) summary
      pfam01001
      Location:61 → 212
      HCV_NS4b; Hepatitis C virus non-structural protein NS4b

    11. YP_007905982.1 putative NS5A protein

      Conserved Domains (1) summary
      pfam08300
      Location:36 → 98
      HCV_NS5a_1a; Hepatitis C virus non-structural 5a zinc finger domain

    12. YP_007905983.1 putative NS5B protein

      Conserved Domains (1) summary
      pfam00998
      Location:3 → 496
      RdRP_3; Viral RNA dependent RNA polymerase
    Protein Accession Links
    GenPept Link UniProtKB Link
    AGJ71780.1

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