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    LINC02583 long intergenic non-protein coding RNA 2583 [ Homo sapiens (human) ]

    Gene ID: 101805491, updated on 27-Aug-2024

    Summary

    Official Symbol
    LINC02583provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2583provided by HGNC
    Primary source
    HGNC:HGNC:53812
    See related
    Ensembl:ENSG00000187600 AllianceGenome:HGNC:53812
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 2.1) See more
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    Genomic context

    Location:
    2p21
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (46429190..46441833)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (46434209..46446852)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (46656329..46668972)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:46620302-46620802 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:46620803-46621303 Neighboring gene long intergenic non-protein coding RNA 1820 Neighboring gene uncharacterized LOC124907762 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:46636005-46636579 Neighboring gene Sharpr-MPRA regulatory region 1085/2665 Neighboring gene Sharpr-MPRA regulatory region 2986 Neighboring gene RNA, 7SL, cytoplasmic 817, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15702 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15703 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:46704474-46705040 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr2:46705041-46705607 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15704 Neighboring gene transmembrane protein 247

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_103805.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC016912, BC031304
      Related
      ENST00000449601.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      46429190..46441833
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      46434209..46446852
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)