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    Fam167a family with sequence similarity 167, member A [ Mus musculus (house mouse) ]

    Gene ID: 219148, updated on 2-Nov-2024

    Summary

    Official Symbol
    Fam167aprovided by MGI
    Official Full Name
    family with sequence similarity 167, member Aprovided by MGI
    Primary source
    MGI:MGI:3606565
    See related
    Ensembl:ENSMUSG00000035095 AllianceGenome:MGI:3606565
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    A030013D21
    Summary
    Is expressed in several structures, including alimentary system; brain; long bone; nasal cavity epithelium; and rib cage. Orthologous to human FAM167A (family with sequence similarity 167 member A). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in testis adult (RPKM 13.5), lung adult (RPKM 4.4) and 11 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Fam167a in Genome Data Viewer
    Location:
    14 D1; 14 33.28 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (63673843..63702951)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (63436394..63465502)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene VISTA enhancer mm245 Neighboring gene predicted gene, 36165 Neighboring gene predicted gene, 46458 Neighboring gene B lymphoid kinase Neighboring gene STARR-positive B cell enhancer ABC_E5448 Neighboring gene STARR-seq mESC enhancer starr_36924 Neighboring gene STARR-seq mESC enhancer starr_36926 Neighboring gene predicted gene 17232 Neighboring gene L-threonine dehydrogenase Neighboring gene myotubularin related protein 9

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (3) 
    • Targeted (2) 

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_177628.5NP_808296.2  protein FAM167A

      See identical proteins and their annotated locations for NP_808296.2

      Status: VALIDATED

      Source sequence(s)
      AC090496
      Consensus CDS
      CCDS27201.1
      UniProtKB/Swiss-Prot
      Q6P1G6
      Related
      ENSMUSP00000113962.2, ENSMUST00000121288.2
      Conserved Domains (1) summary
      pfam11652
      Location:131215
      FAM167

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      63673843..63702951
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006518878.5XP_006518941.1  protein FAM167A isoform X1

      See identical proteins and their annotated locations for XP_006518941.1

      UniProtKB/Swiss-Prot
      Q6P1G6
      Conserved Domains (1) summary
      pfam11652
      Location:131215
      FAM167
    2. XM_006518877.5XP_006518940.1  protein FAM167A isoform X1

      See identical proteins and their annotated locations for XP_006518940.1

      UniProtKB/Swiss-Prot
      Q6P1G6
      Conserved Domains (1) summary
      pfam11652
      Location:131215
      FAM167