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    PTPRK-AS1 PTPRK antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 101928140, updated on 17-Sep-2024

    Summary

    Official Symbol
    PTPRK-AS1provided by HGNC
    Official Full Name
    PTPRK antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:40484
    See related
    AllianceGenome:HGNC:40484
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Ubiquitous expression in gall bladder (RPKM 2.4), colon (RPKM 1.8) and 24 other tissues See more
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    Genomic context

    See PTPRK-AS1 in Genome Data Viewer
    Location:
    6q22.33
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (128027865..128086293)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (129220983..129279414)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (128349010..128407438)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901400 Neighboring gene thymocyte selection associated Neighboring gene MPRA-validated peak6119 silencer Neighboring gene mitochondrial ribosomal protein S17 pseudogene 5 Neighboring gene NANOG hESC enhancer GRCh37_chr6:128343084-128343585 Neighboring gene protein tyrosine phosphatase receptor type K Neighboring gene uncharacterized LOC124900216 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:128446823-128447021 Neighboring gene Sharpr-MPRA regulatory region 6879 Neighboring gene NANOG hESC enhancer GRCh37_chr6:128605097-128605598 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:128840918-128841511 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:128841512-128842106 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:128901198-128901760 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:128901761-128902322 Neighboring gene eukaryotic translation elongation factor 1 delta pseudogene 5

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Phenotypes

    EBI GWAS Catalog

    Description
    Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.
    EBI GWAS Catalog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_125849.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BC033773

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      128027865..128086293
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 ALT_REF_LOCI_1

    Genomic

    1. NT_187556.1 Reference GRCh38.p14 ALT_REF_LOCI_1

      Range
      377199..435627
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      129220983..129279414
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)