U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    SB81_gp1 polyprotein [ Cosavirus JMY-2014 ]

    Gene ID: 22647400, updated on 16-Aug-2018

    Summary

    Go to the top of the page Help
    Gene symbol
    SB81_gp1
    Gene description
    polyprotein
    Locus tag
    SB81_gp1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Cosavirus JMY-2014 (isolate: Cosa-CHN, nat-host: Homo sapiens)
    Lineage
    Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Picornaviridae; Cosavirus; unclassified Cosavirus
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_025961.1 (760..7119)

    NC_025961.1Genomic Context describing neighboring genes

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_025961.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General protein information

    Go to the top of the page Help
    Preferred Names
    polyprotein

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_025961.1 Reference assembly

      Range
      760..7119
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_009112712.1 polyprotein [Cosavirus JMY-2014]

      See identical proteins and their annotated locations for YP_009112712.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A0A7LTT2
      Conserved Domains (5) summary
      cd00205
      Location:401 → 563
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...
      pfam00548
      Location:1491 → 1631
      Peptidase_C3; 3C cysteine protease (picornain 3C)
      pfam00910
      Location:1127 → 1228
      RNA_helicase; RNA helicase
      cl02808
      Location:1669 → 2097
      RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...
      cl13999
      Location:93 → 304
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.