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    LOC4333803 proteasome subunit beta type-2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333803, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4333803
    Gene description
    proteasome subunit beta type-2-like
    Locus tag
    OSNPB_030695600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    PBD1; OsPBD1; OsJ_12208
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    Genomic context

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    See LOC4333803 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (28732241..28734694, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (27858694..27861072, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA J26 Neighboring gene FLUCTUATING-LIGHT-ACCLIMATION protein 1, chloroplastic Neighboring gene chloride channel protein CLC-d Neighboring gene uncharacterized LOC4333805

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Primary structural features of the 20S proteasome subunits of rice (Oryza sativa). Sassa H, et al. Gene, 2000 May 30. PMID 10854779
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in proteasomal protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of proteasome core complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of proteasome core complex, beta-subunit complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    proteasome subunit beta type-2
    Names
    20S proteasome alpha subunit D
    20S proteasome subunit beta-4
    LOC_Os03g48930
    OSJNBb0021P10.3
    beta 4 subunit of 20S proteasome
    NP_001389148.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402219.1 → NP_001389148.1  proteasome subunit beta type-2

      Status: VALIDATED

      Source sequence(s)
      CF291844, CF294241, CI396501
      UniProtKB/Swiss-Prot
      Q10ER6, Q851D9, Q9LST6
      UniProtKB/TrEMBL
      A2XKY8

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      28732241..28734694 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LST6.2 GenPept UniProtKB/Swiss-Prot:Q9LST6

    Gene LinkOut

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