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    THY1 Thy-1 cell surface antigen [ Gallus gallus (chicken) ]

    Gene ID: 378897, updated on 17-Aug-2024

    Summary

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    Symbol
    THY1provided by CGNC
    Full Name
    Thy-1 cell surface antigenprovided by CGNC
    Primary source
    CGNC:5094
    See related
    Ensembl:ENSGALG00010026023
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See THY1 in Genome Data Viewer
    Location:
    chromosome: 24
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 24 NC_052555.1 (4228871..4233289)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 24 NC_052596.1 (4188231..4192660)

    Chromosome 24 - NC_052555.1Genomic Context describing neighboring genes Neighboring gene nectin cell adhesion molecule 1 Neighboring gene uncharacterized LOC112530267 Neighboring gene uncharacterized LOC121107526 Neighboring gene microRNA 1466 Neighboring gene ubiquitin specific peptidase 2 Neighboring gene C1q and TNF related 5 Neighboring gene membrane frizzled-related protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Light activation of the phosphoinositide cycle in intrinsically photosensitive chicken retinal ganglion cells. Contín MA, et al. Invest Ophthalmol Vis Sci, 2010 Nov. PMID 20538988
    2. Expression, purification, and characterization of avian Thy-1 from Lec1 mammalian and Tn5 insect cells. Mehndiratta P, et al. Protein Expr Purif, 2004 Feb. PMID 14711516
    3. Molecular cloning and primary structure of the avian Thy-1 glycoprotein. Dowsing BJ, et al. Brain Res Mol Brain Res, 1992 Jul. PMID 1359371
    4. Cloning and functional characterization of chicken stem cell antigen 2. Mao W, et al. Dev Comp Immunol, 2010 Mar. PMID 19945479
    5. Conserved BK channel-protein interactions reveal signals relevant to cell death and survival. Sokolowski B, et al. PLoS One, 2011. PMID 22174833, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    General protein information

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    Preferred Names
    thy-1 membrane glycoprotein
    Names
    Thy-1/CD90 cell surface antigen
    thy-1 antigen
    NP_989712.2
    XP_040507952.1
    XP_046788208.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_204381.3 → NP_989712.2  thy-1 membrane glycoprotein precursor

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000341
      UniProtKB/TrEMBL
      E1C6J9, Q7T252
      Related
      ENSGALP00010039188.1, ENSGALT00010063479.1
      Conserved Domains (2) summary
      smart00406
      Location:33 → 105
      IGv; Immunoglobulin V-Type
      smart00410
      Location:30 → 123
      IG_like; Immunoglobulin like

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052555.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      4228871..4233289
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040652018.2 → XP_040507952.1  thy-1 membrane glycoprotein isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZZZ5, A0A8V1ACJ8
      Related
      ENSGALP00010039191.1, ENSGALT00010063483.1
      Conserved Domains (1) summary
      smart00409
      Location:48 → 141
      IG; Immunoglobulin

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052596.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      4188231..4192660
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046932252.1 → XP_046788208.1  thy-1 membrane glycoprotein isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZZZ5, A0A8V1ACJ8
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q07212.1 GenPept UniProtKB/Swiss-Prot:Q07212

    Gene LinkOut

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