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    LOC4330317 transcription repressor OFP8-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330317, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4330317
    Gene description
    transcription repressor OFP8-like
    Locus tag
    OSNPB_020679700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4330317 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (28239356..28240696)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (27751122..27752999)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase EL5 Neighboring gene rho GTPase-activating protein 5 Neighboring gene CAAX prenyl protease 1 homolog Neighboring gene pentatricopeptide repeat-containing protein At1g11290, chloroplastic-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in negative regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription repressor OFP8-like
    Names
    Os02g0679700
    P0663F07.21

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      28239356..28240696
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767606.3 → XP_015623092.1  transcription repressor OFP8-like

      UniProtKB/TrEMBL
      B8AGP6, Q0DYN6, Q6EPP0
      Conserved Domains (1) summary
      pfam04844
      Location:178 → 235
      Ovate; Transcriptional repressor, ovate
    Nucleotide Protein
    Heading Accession and Version

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