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    LOC4328479 uncharacterized LOC4328479 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328479, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4328479
    Gene description
    uncharacterized LOC4328479
    Locus tag
    OSNPB_020176400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0504A05.1; OJ1077_E05.25
    Expression
    Ubiquitous expression in roots after flowering (RPKM 38.9), leaves after flowering (RPKM 35.7) and 6 other tissues See more
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    Genomic context

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    See LOC4328479 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (4193502..4195143, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (4184166..4185840, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene B-box zinc finger protein 32 Neighboring gene protein STRUBBELIG-RECEPTOR FAMILY 3 Neighboring gene calcium-transporting ATPase 5, plasma membrane-type-like Neighboring gene putative glucose-6-phosphate 1-epimerase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in endomembrane system IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4328479
    Names
    Os02g0176400
    transmembrane protein 230

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      4193502..4195143 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772219.3 → XP_015627705.1  uncharacterized protein LOC4328479

      UniProtKB/TrEMBL
      A0A0P0VFI8, A2X1I9, A3A3P9, Q6ETP4
      Conserved Domains (1) summary
      pfam05915
      Location:49 → 101
      DUF872; Eukaryotic protein of unknown function (DUF872)
    Nucleotide Protein
    Heading Accession and Version

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