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    LOC4333070 3beta-hydroxysteroid-dehydrogenase/decarboxylase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333070, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4333070
    Gene description
    3beta-hydroxysteroid-dehydrogenase/decarboxylase
    Locus tag
    OSNPB_030404800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in roots before flowering (RPKM 3.1), flowers (RPKM 0.8) and 1 other tissue See more
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    Genomic context

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    See LOC4333070 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (16997600..17007683)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (16551354..16561400)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4333067 Neighboring gene E3 ubiquitin-protein ligase WAV3 Neighboring gene 3beta-hydroxysteroid-dehydrogenase/decarboxylase Neighboring gene uncharacterized LOC4333072

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 3-beta-hydroxy-delta5-steroid dehydrogenase (NAD+) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in steroid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    3beta-hydroxysteroid-dehydrogenase/decarboxylase
    Names
    Os03g0404800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      16997600..17007683
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015774598.3 → XP_015630084.1  3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform X1

      UniProtKB/TrEMBL
      Q10JX3
      Conserved Domains (2) summary
      pfam01073
      Location:27 → 291
      3Beta_HSD; 3-beta hydroxysteroid dehydrogenase/isomerase family
      cl21454
      Location:25 → 291
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins

    2. XM_015774599.3 → XP_015630085.1  3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform X2

      UniProtKB/TrEMBL
      Q0DR98, Q10JX3, Q10JX4
      Conserved Domains (2) summary
      pfam01370
      Location:28 → 248
      Epimerase; NAD dependent epimerase/dehydratase family
      cl21454
      Location:25 → 262
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
    Nucleotide Protein
    Heading Accession and Version

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