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    LOC9268957 putative metallophosphoesterase At3g03305 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9268957, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC9268957
    Gene description
    putative metallophosphoesterase At3g03305
    Locus tag
    OSNPB_030260100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 8.6), leaves before flowering (RPKM 7.3) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (8487469..8492051, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (8437369..8441966, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene myosin-binding protein 3 Neighboring gene uncharacterized LOC112938287 Neighboring gene dynamin-related protein 4C Neighboring gene uncharacterized LOC9271297 Neighboring gene transcription factor bHLH30

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative metallophosphoesterase At3g03305
    Names
    Os03g0260100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      8487469..8492051 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066309115.1 → XP_066165212.1  putative metallophosphoesterase At3g03305 isoform X3

    2. XM_015777535.3 → XP_015633021.1  putative metallophosphoesterase At3g03305 isoform X1

      UniProtKB/TrEMBL
      A0A8J8XNJ8, B8AKB8, B9F750, Q10NS8
      Conserved Domains (1) summary
      cl13995
      Location:47 → 262
      MPP_superfamily; metallophosphatase superfamily, metallophosphatase domain

    3. XM_066309118.1 → XP_066165215.1  putative metallophosphoesterase At3g03305 isoform X4

      UniProtKB/TrEMBL
      A0A0N7KGZ0, C7IZW8

    4. XM_015777536.3 → XP_015633022.1  putative metallophosphoesterase At3g03305 isoform X2

      UniProtKB/TrEMBL
      Q10NS7
      Conserved Domains (1) summary
      cl13995
      Location:4 → 78
      MPP_superfamily; metallophosphatase superfamily, metallophosphatase domain

    5. XM_066309116.1 → XP_066165213.1  putative metallophosphoesterase At3g03305 isoform X4

      UniProtKB/TrEMBL
      A0A0N7KGZ0, C7IZW8

    6. XM_066309117.1 → XP_066165214.1  putative metallophosphoesterase At3g03305 isoform X5

    Nucleotide Protein
    Heading Accession and Version

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