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    LOC4336909 WRKY transcription factor WRKY51-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336909, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4336909
    Gene description
    WRKY transcription factor WRKY51-like
    Locus tag
    OSNPB_040605100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots before flowering (RPKM 100.1), flower buds (RPKM 28.9) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (31051470..31052813)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (30545151..30546570)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136356253 Neighboring gene xyloglucan endotransglucosylase protein 7 Neighboring gene xyloglucan endotransglucosylase protein 7 Neighboring gene uncharacterized LOC4336910 Neighboring gene plant intracellular Ras-group-related LRR protein 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    WRKY transcription factor WRKY51-like
    Names
    Os04g0605100
    probable WRKY transcription factor 11

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      31051470..31052813
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015778146.3 → XP_015633632.1  WRKY transcription factor WRKY51-like

      UniProtKB/TrEMBL
      A0A172ZNK8, A0A6F8F8P2, A3AX61, Q6IEL3, Q7XNY3
      Conserved Domains (2) summary
      pfam03106
      Location:223 → 279
      WRKY; WRKY DNA -binding domain
      pfam10533
      Location:182 → 219
      Plant_zn_clust; Plant zinc cluster domain
    Nucleotide Protein
    Heading Accession and Version

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