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    LOC4335984 zeaxanthin epoxidase, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4335984, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4335984
    Gene description
    zeaxanthin epoxidase, chloroplastic-like
    Locus tag
    OSNPB_040448900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    ZEP; ABA1; OsABA1; OsABA2; OsZEP1
    Expression
    Biased expression in roots after flowering (RPKM 200.0), leaves after flowering (RPKM 149.4) and 3 other tissues See more
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    Genomic context

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    See LOC4335984 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (22862523..22869584)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (22369592..22376811)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene F-box protein FBW2-like Neighboring gene mitochondrial phosphate carrier protein 3, mitochondrial Neighboring gene mitochondrial uncoupling protein 3 Neighboring gene probable fucosyltransferase 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Screening of the rice viviparous mutants generated by endogenous retrotransposon Tos17 insertion. Tagging of a zeaxanthin epoxidase gene and a novel ostatc gene. Agrawal GK, et al. Plant Physiol, 2001 Mar. PMID 11244106, Free PMC Article
    2. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables FAD binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zeaxanthin epoxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in abscisic acid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zeaxanthin epoxidase, chloroplastic
    Names
    LOC_Os04g37619
    OSJNBa0064H22.16
    Os04g0448950
    Protein ABA DEFICIENT 1
    NP_001406295.1
    XP_015636353.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419366.1 → NP_001406295.1  zeaxanthin epoxidase, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      AB050884, CB666234, CB666235, CI233538
      UniProtKB/Swiss-Prot
      A0A0P0WB86, Q0JCU7, Q7XV26, Q9AVE7

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      22862523..22869584
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015780867.3 → XP_015636353.1  zeaxanthin epoxidase, chloroplastic isoform X1

      UniProtKB/TrEMBL
      A2XU09, Q01J71
      Conserved Domains (4) summary
      COG1716
      Location:538 → 631
      FHA; Forkhead associated (FHA) domain, binds pSer, pThr, pTyr [Signal transduction mechanisms]
      cd00060
      Location:522 → 633
      FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
      TIGR01988
      Location:73 → 473
      Ubi-OHases; Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
      cl21454
      Location:73 → 418
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0JCU7.1 GenPept UniProtKB/Swiss-Prot:Q0JCU7

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