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    LOC4339836 cytochrome P450 93G2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339836, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4339836
    Gene description
    cytochrome P450 93G2-like
    Locus tag
    OSNPB_060102100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flowers (RPKM 5.3), leaves before flowering (RPKM 3.9) and 6 other tissues See more
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    Genomic context

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    See LOC4339836 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (319021..321305)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (163181..165337)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene plastocyanin, chloroplastic-like Neighboring gene uncharacterized LOC136356880 Neighboring gene NAC domain containing protein 50 Neighboring gene glutathione gamma-glutamylcysteinyltransferase 1 Neighboring gene transfer RNA serine (anticodon GCU)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables monooxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cytochrome P450 93G2-like
    Names
    3,9-dihydroxypterocarpan 6A-monooxygenase
    OSJNBa0075G19.13
    Os06g0102100
    putative cytochrome P450

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      319021..321305
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015787468.3 → XP_015642954.1  cytochrome P450 93G2-like

      UniProtKB/Swiss-Prot
      Q5VRI5
      UniProtKB/TrEMBL
      A2Y889
      Conserved Domains (1) summary
      cl12078
      Location:27 → 517
      p450; Cytochrome P450
    Nucleotide Protein
    Heading Accession and Version

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