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    Snr1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 [ Parasteatoda tepidariorum (common house spider) ]

    Gene ID: 107441464, updated on 2-Jul-2024

    Summary

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    Gene symbol
    Snr1
    Gene description
    SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1
    See related
    EnsemblRapid:LOC107441464
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Parasteatoda tepidariorum
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Araneae; Araneomorphae; Entelegynae; Araneoidea; Theridiidae; Parasteatoda
    Orthologs
    fruit fly all
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    Genomic context

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    See Snr1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    102 current Ptep_3.0 (GCF_000365465.3) Unplaced Scaffold NW_024969627.1 (781141..809423)
    100 previous assembly Ptep_1.0 (GCF_000365465.1) Unplaced Scaffold NW_015459042.1 (21171..50318, complement)

    NW_024969627.1Genomic Context describing neighboring genes Neighboring gene NFX1-type zinc finger-containing protein 1 Neighboring gene hydroxyacylglutathione hydrolase, mitochondrial-like Neighboring gene AP-5 complex subunit sigma-1 Neighboring gene uncharacterized LOC107441723 Neighboring gene leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolutionary origin of type IV classical cadherins in arthropods. Sasaki M, et al. BMC Evol Biol, 2017 Jun 17. PMID 28623893, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nuclear chromosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Parasteatoda tepidariorum Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Ptep_3.0

    Genomic

    1. NW_024969627.1 Reference Ptep_3.0

      Range
      781141..809423
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_016054738.3 → XP_015910224.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A isoform X1

      Related
      XP_015910224.1, XM_016054738.3
      Conserved Domains (1) summary
      pfam04855
      Location:201 → 380
      SNF5; SNF5 / SMARCB1 / INI1

    2. XM_016054744.3 → XP_015910230.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A isoform X2

      Related
      XP_015910230.1, XM_016054744.3
      Conserved Domains (1) summary
      pfam04855
      Location:167 → 346
      SNF5; SNF5 / SMARCB1 / INI1
    Nucleotide Protein Strain
    Heading Accession and Version

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