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    si:ch73-130a3.4 si:ch73-130a3.4 [ Danio rerio (zebrafish) ]

    Gene ID: 664763, updated on 2-Nov-2024

    Summary

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    Official Symbol
    si:ch73-130a3.4provided by ZNC
    Official Full Name
    si:ch73-130a3.4provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-141219-41
    See related
    Ensembl:ENSDARG00000056213 AllianceGenome:ZFIN:ZDB-GENE-141219-41
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:122991
    Summary
    Predicted to enable DNA binding activity and metal ion binding activity. Orthologous to human THAP6 (THAP domain containing 6). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
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    Genomic context

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    See si:ch73-130a3.4 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (29854238..29861015)
    105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (30266916..30273870)

    Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 3, subunit I Neighboring gene taxilin alpha Neighboring gene karyopherin alpha 6 (importin alpha 7) Neighboring gene uncharacterized LOC137488528 Neighboring gene KH domain containing, RNA binding, signal transduction associated 1b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC122991

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC664763

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001245063.2 → NP_001231992.2  uncharacterized protein LOC664763

      Status: VALIDATED

      Source sequence(s)
      CU633192
      UniProtKB/TrEMBL
      A0A8M1NYS7, F6P462

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007130.7 Reference GRCz11 Primary Assembly

      Range
      29854238..29861015
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068215292.1 → XP_068071393.1  uncharacterized protein LOC664763

      Related
      ENSDARP00000100340.3, ENSDART00000109729.4
    Nucleotide Protein Strain
    Heading Accession and Version

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