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    ix intersex [ Bombyx mori (domestic silkworm) ]

    Gene ID: 692650, updated on 10-May-2024

    Summary

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    Gene symbol
    ix
    Gene description
    intersex
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bombyx mori
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx
    Also known as
    MED29
    Orthologs
    fruit fly all
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_01 current ASM3026992v2 (GCF_030269925.1) 7 NC_085113.1 (7537285..7545256, complement)
    103 previous assembly Bmori_2016v1.0 (GCF_014905235.1) 7 NC_051364.1 (7542196..7550167, complement)

    Chromosome 7 - NC_085113.1Genomic Context describing neighboring genes Neighboring gene regucalcin Neighboring gene holocarboxylase synthetase-like protein Neighboring gene microtubule-associated proteins 1A/1B light chain 3C Neighboring gene DNA repair protein RAD51 homolog 3 Neighboring gene Annexin IX Neighboring gene ATP-binding cassette sub-family E member 1 pix

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Intersex regulates female external genital and imaginal disc development in the silkworm. Xu J, et al. Insect Biochem Mol Biol, 2019 May. PMID 30831220
    2. Functional conservation and divergence of intersex, a gene required for female differentiation in Drosophila melanogaster. Siegal ML, et al. Dev Genes Evol, 2005 Jan. PMID 15645316
    3. Large scale full-length cDNA sequencing reveals a unique genomic landscape in a lepidopteran model insect, Bombyx mori. Suetsugu Y, et al. G3 (Bethesda), 2013 Sep 4. PMID 23821615, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The intersex (ix) gene has multiple functions in female external genital and imaginal disc development in the silkworm
      Title: Intersex regulates female external genital and imaginal disc development in the silkworm.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription factor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of mediator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mediator of RNA polymerase II transcription subunit 29
    Names
    mediator complex subunit 29
    protein intersex

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001043640.1 → NP_001037105.1  mediator of RNA polymerase II transcription subunit 29

      See identical proteins and their annotated locations for NP_001037105.1

      Status: PROVISIONAL

      Source sequence(s)
      AY648340
      UniProtKB/Swiss-Prot
      Q5ISW3
      Conserved Domains (1) summary
      pfam11568
      Location:52 → 190
      Med29; Mediator complex subunit 29

    RefSeqs of Annotated Genomes: GCF_030269925.1-RS_2024_01

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3026992v2 Primary Assembly

    Genomic

    1. NC_085113.1 Reference ASM3026992v2 Primary Assembly

      Range
      7537285..7545256 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5ISW3.1 GenPept UniProtKB/Swiss-Prot:Q5ISW3

    Gene LinkOut

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