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    LOC110234992 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 [ Exaiptasia diaphana ]

    Gene ID: 110234992, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC110234992
    Gene description
    SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
    Locus tag
    AC249_AIPGENE7616
    See related
    EnsemblRapid:LOC110234992
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Exaiptasia diaphana
    Lineage
    Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Aiptasiidae; Exaiptasia
    Also known as
    smarcb1
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    Genomic context

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    See LOC110234992 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_11 current Aiptasia genome 1.1 (GCF_001417965.1) Unplaced Scaffold NW_018385002.1 (815374..819368, complement)

    NW_018385002.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110234991 Neighboring gene rasGAP-activating-like protein 1 Neighboring gene testis-specific serine/threonine-protein kinase 5 Neighboring gene BICD family-like cargo adapter 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_018385002 Unplaced Scaffold Reference Aiptasia genome 1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Developing the anemone Aiptasia as a tractable model for cnidarian-dinoflagellate symbiosis: the transcriptome of aposymbiotic A. pallida. Lehnert EM, et al. BMC Genomics, 2012 Jun 22. PMID 22726260, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nuclear chromosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_001417965.1-RS_2023_11

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Aiptasia genome 1.1

    Genomic

    1. NW_018385002.1 Reference Aiptasia genome 1.1

      Range
      815374..819368 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021040402.2 → XP_020896061.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1

      UniProtKB/TrEMBL
      A0A913WYG1
      Related
      XP_020896061.1, XM_021040402.2
      Conserved Domains (1) summary
      pfam04855
      Location:168 → 352
      SNF5; SNF5 / SMARCB1 / INI1
    Nucleotide Protein
    Heading Accession and Version

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