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    Tnr tenascin R [ Mus pahari (shrew mouse) ]

    Gene ID: 110321780, updated on 15-Mar-2024

    Summary

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    Gene symbol
    Tnr
    Gene description
    tenascin R
    See related
    Ensembl:MGP_PahariEiJ_G0027986
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mus pahari
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Coelomys
    Orthologs
    human mouse all
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    Genomic context

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    See Tnr in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    101 current PAHARI_EIJ_v1.1 (GCF_900095145.1) 5 NC_034594.1 (132416782..132822974)

    Chromosome 5 - NC_034594.1Genomic Context describing neighboring genes Neighboring gene COP1 E3 ubiquitin ligase Neighboring gene small Cajal body-specific RNA 3 Neighboring gene coiled-coil domain-containing protein 115 pseudogene Neighboring gene small nucleolar RNA SNORA17 Neighboring gene transfer RNA leucine (anticodon CAG)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_034594.1 Chromosome 5 Reference PAHARI_EIJ_v1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tenascin-R

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Mus pahari Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference PAHARI_EIJ_v1.1

    Genomic

    1. NC_034594.1 Reference PAHARI_EIJ_v1.1

      Range
      132416782..132822974
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021198259.2 → XP_021053918.1  tenascin-R isoform X1

      Related
      MGP_PahariEiJ_P0075923, MGP_PahariEiJ_T0075923.1
      Conserved Domains (6) summary
      smart00186
      Location:1134 → 1343
      FBG; Fibrinogen-related domains (FReDs)
      cd00063
      Location:1042 → 1127
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam07974
      Location:299 → 323
      EGF_2; EGF-like domain
      pfam00041
      Location:865 → 944
      fn3; Fibronectin type III domain
      pfam18372
      Location:173 → 194
      I-EGF_1; Integrin beta epidermal growth factor like domain 1
      pfam18720
      Location:203 → 231
      EGF_Tenascin; Tenascin EGF domain

    2. XM_029538977.1 → XP_029394837.1  tenascin-R isoform X2

      Conserved Domains (6) summary
      smart00186
      Location:1130 → 1339
      FBG; Fibrinogen-related domains (FReDs)
      cd00063
      Location:1038 → 1123
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam07974
      Location:299 → 323
      EGF_2; EGF-like domain
      pfam00041
      Location:861 → 940
      fn3; Fibronectin type III domain
      pfam18372
      Location:173 → 194
      I-EGF_1; Integrin beta epidermal growth factor like domain 1
      pfam18720
      Location:203 → 231
      EGF_Tenascin; Tenascin EGF domain

    3. XM_029538976.1 → XP_029394836.1  tenascin-R isoform X1

      Related
      MGP_PahariEiJ_P0075925, MGP_PahariEiJ_T0075925.1
      Conserved Domains (6) summary
      smart00186
      Location:1134 → 1343
      FBG; Fibrinogen-related domains (FReDs)
      cd00063
      Location:1042 → 1127
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam07974
      Location:299 → 323
      EGF_2; EGF-like domain
      pfam00041
      Location:865 → 944
      fn3; Fibronectin type III domain
      pfam18372
      Location:173 → 194
      I-EGF_1; Integrin beta epidermal growth factor like domain 1
      pfam18720
      Location:203 → 231
      EGF_Tenascin; Tenascin EGF domain

    4. XM_021198260.2 → XP_021053919.1  tenascin-R isoform X3

      Conserved Domains (3) summary
      smart00186
      Location:801 → 1010
      FBG; Fibrinogen-related domains (FReDs)
      cd00063
      Location:709 → 794
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:532 → 611
      fn3; Fibronectin type III domain
    Nucleotide Protein
    Heading Accession and Version

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