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    FAM199X family with sequence similarity 199, X-linked [ Homo sapiens (human) ]

    Gene ID: 139231, updated on 19-Sep-2024

    Summary

    Official Symbol
    FAM199Xprovided by HGNC
    Official Full Name
    family with sequence similarity 199, X-linkedprovided by HGNC
    Primary source
    HGNC:HGNC:25195
    See related
    Ensembl:ENSG00000123575 AllianceGenome:HGNC:25195
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CXorf39
    Expression
    Ubiquitous expression in brain (RPKM 16.8), fat (RPKM 14.9) and 25 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See FAM199X in Genome Data Viewer
    Location:
    Xq22.2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (104157066..104195902)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (102588277..102627100)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (103411134..103440583)

    Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29826 Neighboring gene H3K27ac hESC enhancer GRCh37_chrX:103410976-103411476 Neighboring gene solute carrier family 25 member 53 Neighboring gene uncharacterized LOC286437 Neighboring gene zinc finger CCHC-type containing 18 Neighboring gene ReSE screen-validated silencer GRCh37_chrX:103481389-103481600 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:103498244-103499059 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrX:103502018-103502809 Neighboring gene ReSE screen-validated silencer GRCh37_chrX:103515830-103516014 Neighboring gene H3K27ac hESC enhancer GRCh37_chrX:103587712-103588212 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:103611071-103611570 Neighboring gene ESX homeobox 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:103811957-103812714 Neighboring gene interleukin 1 receptor accessory protein like 2 Neighboring gene PHB1 pseudogene 10

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_207318.4NP_997201.1  protein FAM199X

      See identical proteins and their annotated locations for NP_997201.1

      Status: VALIDATED

      Source sequence(s)
      AI571005, AL049631, AL135959, BC057847
      Consensus CDS
      CCDS35364.1
      UniProtKB/Swiss-Prot
      Q6PEV8, Q8WVP6, Q96AV3
      UniProtKB/TrEMBL
      B0QYU2
      Related
      ENSP00000417581.1, ENST00000493442.2
      Conserved Domains (1) summary
      pfam15814
      Location:66388
      FAM199X; Protein family FAM199X

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

      Range
      104157066..104195902
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_047441826.1XP_047297782.1  protein FAM199X isoform X2

    2. XM_005262079.4XP_005262136.1  protein FAM199X isoform X1

      See identical proteins and their annotated locations for XP_005262136.1

      UniProtKB/Swiss-Prot
      Q6PEV8
      Conserved Domains (1) summary
      pfam15814
      Location:66345
      FAM199X; Protein family FAM199X

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060947.1 Alternate T2T-CHM13v2.0

      Range
      102588277..102627100
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054326468.1XP_054182443.1  protein FAM199X isoform X2

    2. XM_054326467.1XP_054182442.1  protein FAM199X isoform X1