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    LOC101882402 zinc finger protein 135-like [ Danio rerio (zebrafish) ]

    Gene ID: 101882402, updated on 27-Mar-2024

    Summary

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    Gene symbol
    LOC101882402
    Gene description
    zinc finger protein 135-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (6938866..6989241, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (7035855..7103401, complement)

    Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene gastrula zinc finger protein XlCGF7.1-like Neighboring gene zinc finger protein 501-like Neighboring gene gastrula zinc finger protein XlCGF7.1-like Neighboring gene gastrula zinc finger protein XlCGF7.1-like Neighboring gene zinc finger protein 135-like Neighboring gene zinc finger protein 239-like Neighboring gene gastrula zinc finger protein XlCGF8.2DB-like Neighboring gene uncharacterized LOC110439332 Neighboring gene gastrula zinc finger protein XlCGF8.2DB-like Neighboring gene gastrula zinc finger protein XlCGF7.1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    zinc finger protein 135-like; zinc finger protein 235-like; zinc finger protein 678-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007114.7 Reference GRCz11 Primary Assembly

      Range
      6938866..6989241 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021474880.1 → XP_021330555.1  zinc finger protein 135-like isoform X1

      UniProtKB/TrEMBL
      A0A8M9Q028
      Conserved Domains (2) summary
      COG5048
      Location:26 → 333
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:137 → 157
      ZF_C2H2; C2H2 Zn finger [structural motif]

    2. XM_021474879.1 → XP_021330554.1  zinc finger protein 135-like isoform X1

      UniProtKB/TrEMBL
      A0A8M9Q028
      Conserved Domains (2) summary
      COG5048
      Location:26 → 333
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:137 → 157
      ZF_C2H2; C2H2 Zn finger [structural motif]

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394517.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      67102..105731 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021471345.1 → XP_021327020.1  zinc finger protein 235-like isoform X2

      UniProtKB/TrEMBL
      A0A8M9Q0W3
      Conserved Domains (2) summary
      COG5048
      Location:26 → 333
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:137 → 157
      ZF_C2H2; C2H2 Zn finger [structural motif]

    2. XM_021471344.1 → XP_021327019.1  zinc finger protein 235-like isoform X2

      UniProtKB/TrEMBL
      A0A8M9Q0W3
      Conserved Domains (2) summary
      COG5048
      Location:26 → 333
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:137 → 157
      ZF_C2H2; C2H2 Zn finger [structural motif]

    Reference GRCz11 ALT_DRER_TU_2

    Genomic

    1. NW_018395225.1 Reference GRCz11 ALT_DRER_TU_2

      Range
      97658..99132 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021473961.1 → XP_021329636.1  zinc finger protein 678-like isoform X3

      UniProtKB/TrEMBL
      A0A8M9Q4B6
      Conserved Domains (2) summary
      COG5048
      Location:18 → 325
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:129 → 149
      ZF_C2H2; C2H2 Zn finger [structural motif]
    Nucleotide Protein Strain
    Heading Accession and Version

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