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    LOC105205783 vitellogenin-3 [ Solenopsis invicta (red fire ant) ]

    Gene ID: 105205783, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC105205783
    Gene description
    vitellogenin-3
    Locus tag
    SINV_02565
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Solenopsis invicta
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Myrmicinae; Solenopsis
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    Genomic context

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    See LOC105205783 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    104 current UNIL_Sinv_3.0 (GCF_016802725.1) 5 NC_052668.1 (17538568..17545891)
    103 previous assembly Si_gnH (GCF_000188075.2) Unplaced Scaffold NW_020521538.1 (2406236..2413558, complement)

    Chromosome 5 - NC_052668.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113003227 Neighboring gene transfer RNA serine (anticodon AGA) Neighboring gene alanine--glyoxylate aminotransferase 2-like Neighboring gene vitellogenin-2 Neighboring gene Vitellogenin-1 Neighboring gene spermatogenesis-associated protein 17

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Comparative transcriptomics reveals the conserved building blocks involved in parallel evolution of diverse phenotypic traits in ants. Morandin C, et al. Genome Biol, 2016 Mar 7. PMID 26951146, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables lipid transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lipid transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vitellogenin-3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001304585.1 → NP_001291514.1  vitellogenin-3 precursor

      See identical proteins and their annotated locations for NP_001291514.1

      Status: PROVISIONAL

      Source sequence(s)
      AY941796
      UniProtKB/Swiss-Prot
      Q2VQM5
      Conserved Domains (3) summary
      smart00216
      Location:1397 → 1570
      VWD; von Willebrand factor (vWF) type D domain
      pfam01347
      Location:24 → 730
      Vitellogenin_N; Lipoprotein amino terminal region
      pfam09172
      Location:764 → 1032
      DUF1943; Domain of unknown function (DUF1943)

    RefSeqs of Annotated Genomes: Solenopsis invicta Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UNIL_Sinv_3.0

    Genomic

    1. NC_052668.1 Reference UNIL_Sinv_3.0

      Range
      17538568..17545891
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2VQM5.1 GenPept UniProtKB/Swiss-Prot:Q2VQM5

    Gene LinkOut

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    Molecular Biology Databases