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    LOC112881873 DNA mismatch repair protein MSH6 [ Panicum hallii ]

    Gene ID: 112881873, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC112881873
    Gene description
    DNA mismatch repair protein MSH6
    Locus tag
    PAHAL_2G259800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Panicum hallii
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum; Panicum sect. Panicum
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    Genomic context

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    See LOC112881873 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    100 current PHallii_v3.1 (GCF_002211085.1) 2 NC_038043.1 (42525693..42534596)

    Chromosome 2 - NC_038043.1Genomic Context describing neighboring genes Neighboring gene cytokinin hydroxylase-like Neighboring gene probable ubiquitin receptor RAD23 Neighboring gene cyclin-dependent kinase 12-like Neighboring gene uncharacterized LOC112883002 Neighboring gene dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_038043.1 Chromosome 2 Reference PHallii_v3.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent DNA damage sensor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables mismatched DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mismatch repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA mismatch repair protein MSH6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Panicum hallii Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference PHallii_v3.1

    Genomic

    1. NC_038043.1 Reference PHallii_v3.1

      Range
      42525693..42534596
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025946772.1 → XP_025802557.1  DNA mismatch repair protein MSH6

      UniProtKB/TrEMBL
      A0A2S3GZV2, A0A2T7ES66
      Conserved Domains (2) summary
      COG0249
      Location:363 → 1306
      MutS; DNA mismatch repair ATPase MutS [Replication, recombination and repair]
      cl02573
      Location:104 → 149
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    Nucleotide Protein Strain
    Heading Accession and Version

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