U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    SEMA3D semaphorin 3D [ Canis lupus familiaris (dog) ]

    Gene ID: 475929, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    SEMA3Dprovided by VGNC
    Official Full Name
    semaphorin 3Dprovided by VGNC
    Primary source
    VGNC:VGNC:45990
    See related
    Ensembl:ENSCAFG00845027736
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SEMA3D in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 18 NC_051822.1 (24708889..24925861, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 18 NC_006600.4 (23932740..24149080, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 18 NC_049239.1 (24538712..24755683, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 18 NC_049278.1 (24357283..24573713, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 18 NC_049759.1 (23871664..24088431, complement)

    Chromosome 18 - NC_051822.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111090805 Neighboring gene uncharacterized LOC119864107 Neighboring gene uncharacterized LOC102156437 Neighboring gene U6 spliceosomal RNA Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC111090831

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chemorepellent activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables semaphorin receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative chemotaxis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of axon extension involved in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neural crest cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in semaphorin-plexin signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    semaphorin-3D

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051822.1 Reference ROS_Cfam_1.0

      Range
      24708889..24925861 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038423954.1 → XP_038279882.1  semaphorin-3D isoform X3

      UniProtKB/TrEMBL
      A0A8C0MNW5
      Conserved Domains (4) summary
      cd11252
      Location:61 → 534
      Sema_3D; The Sema domain, a protein interacting module, of semaphorin 3D (Sema3D)
      smart00423
      Location:533 → 570
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd00096
      Location:595 → 601
      Ig; Ig strand A [structural motif]
      cl11960
      Location:595 → 637
      Ig; Immunoglobulin domain

    2. XM_038423955.1 → XP_038279883.1  semaphorin-3D isoform X4

      UniProtKB/TrEMBL
      A0A8C0MNW5
      Conserved Domains (4) summary
      cd11252
      Location:61 → 534
      Sema_3D; The Sema domain, a protein interacting module, of semaphorin 3D (Sema3D)
      smart00423
      Location:533 → 570
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd00096
      Location:595 → 601
      Ig; Ig strand A [structural motif]
      cl11960
      Location:595 → 636
      Ig; Immunoglobulin domain

    3. XM_038423952.1 → XP_038279880.1  semaphorin-3D isoform X1

      UniProtKB/TrEMBL
      A0A8C0L6K6, A0A8C0MNW5, A0A8C0N1G0, A0A8I3Q2U6
      Conserved Domains (3) summary
      cd11252
      Location:61 → 534
      Sema_3D; The Sema domain, a protein interacting module, of semaphorin 3D (Sema3D)
      smart00423
      Location:533 → 570
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd05871
      Location:595 → 686
      Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3

    4. XM_038423953.1 → XP_038279881.1  semaphorin-3D isoform X2

      UniProtKB/TrEMBL
      A0A8C0MNW5
      Conserved Domains (3) summary
      cd11252
      Location:61 → 534
      Sema_3D; The Sema domain, a protein interacting module, of semaphorin 3D (Sema3D)
      smart00423
      Location:533 → 564
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd05871
      Location:588 → 679
      Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3

    5. XM_038423949.1 → XP_038279877.1  semaphorin-3D isoform X1

      UniProtKB/TrEMBL
      A0A8C0L6K6, A0A8C0MNW5, A0A8C0N1G0, A0A8I3Q2U6
      Related
      ENSCAFP00845038390.1, ENSCAFT00845048938.1
      Conserved Domains (3) summary
      cd11252
      Location:61 → 534
      Sema_3D; The Sema domain, a protein interacting module, of semaphorin 3D (Sema3D)
      smart00423
      Location:533 → 570
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd05871
      Location:595 → 686
      Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3

    6. XM_038423951.1 → XP_038279879.1  semaphorin-3D isoform X1

      UniProtKB/TrEMBL
      A0A8C0L6K6, A0A8C0MNW5, A0A8C0N1G0, A0A8I3Q2U6
      Conserved Domains (3) summary
      cd11252
      Location:61 → 534
      Sema_3D; The Sema domain, a protein interacting module, of semaphorin 3D (Sema3D)
      smart00423
      Location:533 → 570
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd05871
      Location:595 → 686
      Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3

    7. XM_038423950.1 → XP_038279878.1  semaphorin-3D isoform X1

      UniProtKB/TrEMBL
      A0A8C0L6K6, A0A8C0MNW5, A0A8C0N1G0, A0A8I3Q2U6
      Conserved Domains (3) summary
      cd11252
      Location:61 → 534
      Sema_3D; The Sema domain, a protein interacting module, of semaphorin 3D (Sema3D)
      smart00423
      Location:533 → 570
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd05871
      Location:595 → 686
      Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049278.1 Alternate UMICH_Zoey_3.1

      Range
      24357283..24573713 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038500313.1 → XP_038356241.1  semaphorin-3D isoform X3

      Conserved Domains (4) summary
      cd11252
      Location:61 → 534
      Sema_3D; The Sema domain, a protein interacting module, of semaphorin 3D (Sema3D)
      smart00423
      Location:533 → 570
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd00096
      Location:595 → 601
      Ig; Ig strand A [structural motif]
      cl11960
      Location:595 → 637
      Ig; Immunoglobulin domain

    2. XM_038500314.1 → XP_038356242.1  semaphorin-3D isoform X4

      Conserved Domains (4) summary
      cd11252
      Location:61 → 534
      Sema_3D; The Sema domain, a protein interacting module, of semaphorin 3D (Sema3D)
      smart00423
      Location:533 → 570
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd00096
      Location:595 → 601
      Ig; Ig strand A [structural motif]
      cl11960
      Location:595 → 636
      Ig; Immunoglobulin domain

    3. XM_038500311.1 → XP_038356239.1  semaphorin-3D isoform X1

      Conserved Domains (3) summary
      cd11252
      Location:61 → 534
      Sema_3D; The Sema domain, a protein interacting module, of semaphorin 3D (Sema3D)
      smart00423
      Location:533 → 570
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd05871
      Location:595 → 686
      Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3

    4. XM_038500312.1 → XP_038356240.1  semaphorin-3D isoform X2

      Conserved Domains (3) summary
      cd11252
      Location:61 → 534
      Sema_3D; The Sema domain, a protein interacting module, of semaphorin 3D (Sema3D)
      smart00423
      Location:533 → 564
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd05871
      Location:588 → 679
      Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3

    5. XM_038500309.1 → XP_038356237.1  semaphorin-3D isoform X1

      Conserved Domains (3) summary
      cd11252
      Location:61 → 534
      Sema_3D; The Sema domain, a protein interacting module, of semaphorin 3D (Sema3D)
      smart00423
      Location:533 → 570
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd05871
      Location:595 → 686
      Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3

    6. XM_038500310.1 → XP_038356238.1  semaphorin-3D isoform X1

      Conserved Domains (3) summary
      cd11252
      Location:61 → 534
      Sema_3D; The Sema domain, a protein interacting module, of semaphorin 3D (Sema3D)
      smart00423
      Location:533 → 570
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd05871
      Location:595 → 686
      Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049759.1 Alternate UNSW_CanFamBas_1.0

      Range
      23871664..24088431 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038626988.1 → XP_038482916.1  semaphorin-3D isoform X3

      Conserved Domains (4) summary
      cd11252
      Location:61 → 534
      Sema_3D; The Sema domain, a protein interacting module, of semaphorin 3D (Sema3D)
      smart00423
      Location:533 → 570
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd00096
      Location:595 → 601
      Ig; Ig strand A [structural motif]
      cl11960
      Location:595 → 637
      Ig; Immunoglobulin domain

    2. XM_038626990.1 → XP_038482918.1  semaphorin-3D isoform X4

      Conserved Domains (4) summary
      cd11252
      Location:61 → 534
      Sema_3D; The Sema domain, a protein interacting module, of semaphorin 3D (Sema3D)
      smart00423
      Location:533 → 570
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd00096
      Location:595 → 601
      Ig; Ig strand A [structural motif]
      cl11960
      Location:595 → 636
      Ig; Immunoglobulin domain

    3. XM_038626986.1 → XP_038482914.1  semaphorin-3D isoform X1

      Conserved Domains (3) summary
      cd11252
      Location:61 → 534
      Sema_3D; The Sema domain, a protein interacting module, of semaphorin 3D (Sema3D)
      smart00423
      Location:533 → 570
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd05871
      Location:595 → 686
      Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3

    4. XM_038626987.1 → XP_038482915.1  semaphorin-3D isoform X2

      Conserved Domains (3) summary
      cd11252
      Location:61 → 534
      Sema_3D; The Sema domain, a protein interacting module, of semaphorin 3D (Sema3D)
      smart00423
      Location:533 → 564
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd05871
      Location:588 → 679
      Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3

    5. XM_038626984.1 → XP_038482912.1  semaphorin-3D isoform X1

      Conserved Domains (3) summary
      cd11252
      Location:61 → 534
      Sema_3D; The Sema domain, a protein interacting module, of semaphorin 3D (Sema3D)
      smart00423
      Location:533 → 570
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd05871
      Location:595 → 686
      Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3

    6. XM_038626985.1 → XP_038482913.1  semaphorin-3D isoform X1

      Conserved Domains (3) summary
      cd11252
      Location:61 → 534
      Sema_3D; The Sema domain, a protein interacting module, of semaphorin 3D (Sema3D)
      smart00423
      Location:533 → 570
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd05871
      Location:595 → 686
      Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049239.1 Alternate UU_Cfam_GSD_1.0

      Range
      24538712..24755683 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038562869.1 → XP_038418797.1  semaphorin-3D isoform X3

      UniProtKB/TrEMBL
      A0A8C0MNW5
      Conserved Domains (4) summary
      cd11252
      Location:61 → 534
      Sema_3D; The Sema domain, a protein interacting module, of semaphorin 3D (Sema3D)
      smart00423
      Location:533 → 570
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd00096
      Location:595 → 601
      Ig; Ig strand A [structural motif]
      cl11960
      Location:595 → 637
      Ig; Immunoglobulin domain

    2. XM_038562870.1 → XP_038418798.1  semaphorin-3D isoform X4

      UniProtKB/TrEMBL
      A0A8C0MNW5
      Conserved Domains (4) summary
      cd11252
      Location:61 → 534
      Sema_3D; The Sema domain, a protein interacting module, of semaphorin 3D (Sema3D)
      smart00423
      Location:533 → 570
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd00096
      Location:595 → 601
      Ig; Ig strand A [structural motif]
      cl11960
      Location:595 → 636
      Ig; Immunoglobulin domain

    3. XM_038562867.1 → XP_038418795.1  semaphorin-3D isoform X1

      UniProtKB/TrEMBL
      A0A8C0L6K6, A0A8C0MNW5, A0A8C0N1G0, A0A8I3Q2U6
      Conserved Domains (3) summary
      cd11252
      Location:61 → 534
      Sema_3D; The Sema domain, a protein interacting module, of semaphorin 3D (Sema3D)
      smart00423
      Location:533 → 570
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd05871
      Location:595 → 686
      Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3

    4. XM_038562868.1 → XP_038418796.1  semaphorin-3D isoform X2

      UniProtKB/TrEMBL
      A0A8C0MNW5
      Conserved Domains (3) summary
      cd11252
      Location:61 → 534
      Sema_3D; The Sema domain, a protein interacting module, of semaphorin 3D (Sema3D)
      smart00423
      Location:533 → 564
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd05871
      Location:588 → 679
      Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3

    5. XM_038562864.1 → XP_038418792.1  semaphorin-3D isoform X1

      UniProtKB/TrEMBL
      A0A8C0L6K6, A0A8C0MNW5, A0A8C0N1G0, A0A8I3Q2U6
      Conserved Domains (3) summary
      cd11252
      Location:61 → 534
      Sema_3D; The Sema domain, a protein interacting module, of semaphorin 3D (Sema3D)
      smart00423
      Location:533 → 570
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd05871
      Location:595 → 686
      Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3

    6. XM_038562866.1 → XP_038418794.1  semaphorin-3D isoform X1

      UniProtKB/TrEMBL
      A0A8C0L6K6, A0A8C0MNW5, A0A8C0N1G0, A0A8I3Q2U6
      Conserved Domains (3) summary
      cd11252
      Location:61 → 534
      Sema_3D; The Sema domain, a protein interacting module, of semaphorin 3D (Sema3D)
      smart00423
      Location:533 → 570
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd05871
      Location:595 → 686
      Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3

    7. XM_038562865.1 → XP_038418793.1  semaphorin-3D isoform X1

      UniProtKB/TrEMBL
      A0A8C0L6K6, A0A8C0MNW5, A0A8C0N1G0, A0A8I3Q2U6
      Conserved Domains (3) summary
      cd11252
      Location:61 → 534
      Sema_3D; The Sema domain, a protein interacting module, of semaphorin 3D (Sema3D)
      smart00423
      Location:533 → 570
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd05871
      Location:595 → 686
      Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006600.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      23932740..24149080 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038453954.1 → XP_038309882.1  semaphorin-3D isoform X3

      UniProtKB/TrEMBL
      A0A8C0MNW5
      Conserved Domains (4) summary
      cd11252
      Location:61 → 534
      Sema_3D; The Sema domain, a protein interacting module, of semaphorin 3D (Sema3D)
      smart00423
      Location:533 → 570
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd00096
      Location:595 → 601
      Ig; Ig strand A [structural motif]
      cl11960
      Location:595 → 637
      Ig; Immunoglobulin domain

    2. XM_038453955.1 → XP_038309883.1  semaphorin-3D isoform X4

      UniProtKB/TrEMBL
      A0A8C0MNW5
      Conserved Domains (4) summary
      cd11252
      Location:61 → 534
      Sema_3D; The Sema domain, a protein interacting module, of semaphorin 3D (Sema3D)
      smart00423
      Location:533 → 570
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd00096
      Location:595 → 601
      Ig; Ig strand A [structural motif]
      cl11960
      Location:595 → 636
      Ig; Immunoglobulin domain

    3. XM_038453952.1 → XP_038309880.1  semaphorin-3D isoform X1

      UniProtKB/TrEMBL
      A0A8C0L6K6, A0A8C0MNW5, A0A8C0N1G0, A0A8I3Q2U6
      Conserved Domains (3) summary
      cd11252
      Location:61 → 534
      Sema_3D; The Sema domain, a protein interacting module, of semaphorin 3D (Sema3D)
      smart00423
      Location:533 → 570
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd05871
      Location:595 → 686
      Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3

    4. XM_038453953.1 → XP_038309881.1  semaphorin-3D isoform X2

      UniProtKB/TrEMBL
      A0A8C0MNW5
      Conserved Domains (3) summary
      cd11252
      Location:61 → 534
      Sema_3D; The Sema domain, a protein interacting module, of semaphorin 3D (Sema3D)
      smart00423
      Location:533 → 564
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd05871
      Location:588 → 679
      Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3

    5. XM_038453951.1 → XP_038309879.1  semaphorin-3D isoform X1

      UniProtKB/TrEMBL
      A0A8C0L6K6, A0A8C0MNW5, A0A8C0N1G0, A0A8I3Q2U6
      Conserved Domains (3) summary
      cd11252
      Location:61 → 534
      Sema_3D; The Sema domain, a protein interacting module, of semaphorin 3D (Sema3D)
      smart00423
      Location:533 → 570
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd05871
      Location:595 → 686
      Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3

    6. XM_533138.6 → XP_533138.2  semaphorin-3D isoform X1

      See identical proteins and their annotated locations for XP_533138.2

      UniProtKB/TrEMBL
      A0A8C0L6K6, A0A8C0MNW5, A0A8C0N1G0, A0A8I3Q2U6
      Conserved Domains (3) summary
      cd11252
      Location:61 → 534
      Sema_3D; The Sema domain, a protein interacting module, of semaphorin 3D (Sema3D)
      smart00423
      Location:533 → 570
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd05871
      Location:595 → 686
      Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3

    7. XM_022405267.2 → XP_022260975.1  semaphorin-3D isoform X1

      UniProtKB/TrEMBL
      A0A8C0L6K6, A0A8C0MNW5, A0A8C0N1G0, A0A8I3Q2U6
      Conserved Domains (3) summary
      cd11252
      Location:61 → 534
      Sema_3D; The Sema domain, a protein interacting module, of semaphorin 3D (Sema3D)
      smart00423
      Location:533 → 570
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd05871
      Location:595 → 686
      Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials