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    LOC111901947 alcohol dehydrogenase 2 [ Lactuca sativa (garden lettuce) ]

    Gene ID: 111901947, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC111901947
    Gene description
    alcohol dehydrogenase 2
    Locus tag
    LSAT_V11C600335190
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lactuca sativa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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    Genomic context

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    See LOC111901947 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2022_12 current Lsat_Salinas_v11 (GCF_002870075.4) 6 NC_056628.2 (169946318..169949629, complement)
    101 previous assembly Lsat_Salinas_v7 (GCF_002870075.2) 6 NC_056628.1 (158496862..158500168, complement)

    Chromosome 6 - NC_056628.2Genomic Context describing neighboring genes Neighboring gene psbP domain-containing protein 4, chloroplastic Neighboring gene probable glucuronosyltransferase GUT1 Neighboring gene alcohol dehydrogenase 2 Neighboring gene uncharacterized LOC111901983

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables S-(hydroxymethyl)glutathione dehydrogenase [NAD(P)+] activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in formaldehyde catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    alcohol dehydrogenase 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002870075.4-RS_2023_1

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Lsat_Salinas_v11 Primary Assembly

    Genomic

    1. NC_056628.2 Reference Lsat_Salinas_v11 Primary Assembly

      Range
      169946318..169949629 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023897814.3 → XP_023753582.1  alcohol dehydrogenase 2 isoform X1

    2. XM_023897815.3 → XP_023753583.1  alcohol dehydrogenase 2 isoform X2

    3. XM_023897817.2 → XP_023753585.1  alcohol dehydrogenase 2 isoform X4

      UniProtKB/TrEMBL
      Q40249

    4. XM_023897816.2 → XP_023753584.1  alcohol dehydrogenase 2 isoform X3

      UniProtKB/TrEMBL
      Q40249

    5. XM_052764777.1 → XP_052620737.1  alcohol dehydrogenase 2 isoform X4

    Nucleotide Protein
    Heading Accession and Version

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