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    LOC112237706 spastin [ Oncorhynchus tshawytscha (Chinook salmon) ]

    Gene ID: 112237706, updated on 18-Jun-2024

    Summary

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    Gene symbol
    LOC112237706
    Gene description
    spastin
    See related
    Ensembl:ENSOTSG00005040118
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oncorhynchus tshawytscha
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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    Genomic context

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    See LOC112237706 in Genome Data Viewer
    Location:
    chromosome: LG32
    Exon count:
    17
    Annotation release Status Assembly LG Location
    101 current Otsh_v2.0 (GCF_018296145.1) LG32 NC_056460.1 (5755597..5784584)
    100 previous assembly Otsh_v1.0 (GCF_002872995.1) Unplaced Scaffold NW_020129316.1 (11365..40412, complement)

    Linkage Group LG32 - NC_056460.1Genomic Context describing neighboring genes Neighboring gene 3-oxo-5-alpha-steroid 4-dehydrogenase 2 Neighboring gene presenilin-2-like Neighboring gene protein dpy-30 homolog Neighboring gene dispanin subfamily A member 2b-like Neighboring gene dispanin subfamily A member 2b-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables microtubule severing ATPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in microtubule cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    spastin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oncorhynchus tshawytscha Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Otsh_v2.0 Primary Assembly

    Genomic

    1. NC_056460.1 Reference Otsh_v2.0 Primary Assembly

      Range
      5755597..5784584
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024406305.2 → XP_024262073.1  spastin isoform X1

      UniProtKB/TrEMBL
      A0A8C8J211, A0A8C8JAE8
      Related
      ENSOTSP00005089012.2, ENSOTST00005096633.2
      Conserved Domains (2) summary
      COG0464
      Location:290 → 571
      SpoVK; AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms]
      cd02679
      Location:97 → 175
      MIT_spastin; MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be ...

    2. XM_024406307.2 → XP_024262075.1  spastin isoform X2

      UniProtKB/TrEMBL
      A0A8C8J3D5
      Related
      ENSOTSP00005089044.1, ENSOTST00005096665.2
      Conserved Domains (2) summary
      COG0464
      Location:262 → 543
      SpoVK; AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms]
      cd02679
      Location:97 → 175
      MIT_spastin; MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be ...
    Nucleotide Protein
    Heading Accession and Version

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