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    NPHP1 nephrocystin 1 [ Alligator sinensis (Chinese alligator) ]

    Gene ID: 102382844, updated on 10-Mar-2024

    Summary

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    Gene symbol
    NPHP1
    Gene description
    nephrocystin 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Alligator sinensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
    Orthologs
    human mouse all
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    Genomic context

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    See NPHP1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    102 current ASM45574v1 (GCF_000455745.1) Unplaced Scaffold NW_005842999.1 (368072..439654, complement)

    NW_005842999.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein RFP-like Neighboring gene mal, T cell differentiation protein like Neighboring gene uncharacterized LOC112548207 Neighboring gene two pore calcium channel protein 2-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_005842999 Unplaced Scaffold Reference ASM45574v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein localization involved in establishment of planar polarity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cilium IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nephrocystin-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Alligator sinensis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM45574v1 Primary Assembly

    Genomic

    1. NW_005842999.1 Reference ASM45574v1 Primary Assembly

      Range
      368072..439654 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025193025.1 → XP_025048810.1  nephrocystin-1

      UniProtKB/TrEMBL
      A0A3Q0FRP8
      Conserved Domains (1) summary
      cd11770
      Location:218 → 271
      SH3_Nephrocystin; Src Homology 3 domain of Nephrocystin (or Nephrocystin-1)
    Nucleotide Protein
    Heading Accession and Version

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