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    SEMA3D semaphorin 3D [ Canis lupus dingo (dingo) ]

    Gene ID: 112661302, updated on 15-Mar-2024

    Summary

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    Gene symbol
    SEMA3D
    Gene description
    semaphorin 3D
    See related
    Ensembl:ENSCAFG00020020318
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus dingo (sub-species: dingo)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See SEMA3D in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    102 current ASM325472v2 (GCF_003254725.2) 18 NC_064260.1 (24065114..24282087, complement)
    101 previous assembly UNSW_AlpineDingo_1.0 (GCF_012295265.1) 18 Unlocalized Scaffold NW_023365182.1 (24523128..24740160, complement)

    Chromosome 18 - NC_064260.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC125752915 Neighboring gene uncharacterized LOC118351442 Neighboring gene uncharacterized LOC112661304 Neighboring gene U6 spliceosomal RNA Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC112661530

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chemorepellent activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables semaphorin receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative chemotaxis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of axon extension involved in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neural crest cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in semaphorin-plexin signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    semaphorin-3D

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus dingo Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM325472v2

    Genomic

    1. NC_064260.1 Reference ASM325472v2

      Range
      24065114..24282087 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035701533.2 → XP_035557426.1  semaphorin-3D isoform X3

      UniProtKB/TrEMBL
      A0A8C0MNW5
      Conserved Domains (4) summary
      cd11252
      Location:61 → 534
      Sema_3D; The Sema domain, a protein interacting module, of semaphorin 3D (Sema3D)
      smart00423
      Location:533 → 570
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd00096
      Location:595 → 601
      Ig; Ig strand A [structural motif]
      cl11960
      Location:595 → 637
      Ig; Immunoglobulin domain

    2. XM_025449289.3 → XP_025305074.1  semaphorin-3D isoform X4

      UniProtKB/TrEMBL
      A0A8C0MNW5
      Conserved Domains (4) summary
      cd11252
      Location:61 → 534
      Sema_3D; The Sema domain, a protein interacting module, of semaphorin 3D (Sema3D)
      smart00423
      Location:533 → 570
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd00096
      Location:595 → 601
      Ig; Ig strand A [structural motif]
      cl11960
      Location:595 → 636
      Ig; Immunoglobulin domain

    3. XM_035701532.2 → XP_035557425.1  semaphorin-3D isoform X1

      UniProtKB/TrEMBL
      A0A8C0L6K6, A0A8C0MNW5, A0A8C0N1G0, A0A8I3Q2U6
      Conserved Domains (3) summary
      cd11252
      Location:61 → 534
      Sema_3D; The Sema domain, a protein interacting module, of semaphorin 3D (Sema3D)
      smart00423
      Location:533 → 570
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd05871
      Location:595 → 686
      Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3

    4. XM_025449288.3 → XP_025305073.1  semaphorin-3D isoform X2

      UniProtKB/TrEMBL
      A0A8C0MNW5
      Conserved Domains (3) summary
      cd11252
      Location:61 → 534
      Sema_3D; The Sema domain, a protein interacting module, of semaphorin 3D (Sema3D)
      smart00423
      Location:533 → 564
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd05871
      Location:588 → 679
      Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3

    5. XM_025449285.3 → XP_025305070.1  semaphorin-3D isoform X1

      UniProtKB/TrEMBL
      A0A8C0L6K6, A0A8C0MNW5, A0A8C0N1G0, A0A8I3Q2U6
      Related
      ENSCAFP00020025878.1
      Conserved Domains (3) summary
      cd11252
      Location:61 → 534
      Sema_3D; The Sema domain, a protein interacting module, of semaphorin 3D (Sema3D)
      smart00423
      Location:533 → 570
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd05871
      Location:595 → 686
      Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3

    6. XM_025449287.3 → XP_025305072.1  semaphorin-3D isoform X1

      UniProtKB/TrEMBL
      A0A8C0L6K6, A0A8C0MNW5, A0A8C0N1G0, A0A8I3Q2U6
      Conserved Domains (3) summary
      cd11252
      Location:61 → 534
      Sema_3D; The Sema domain, a protein interacting module, of semaphorin 3D (Sema3D)
      smart00423
      Location:533 → 570
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd05871
      Location:595 → 686
      Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3

    7. XM_035701531.2 → XP_035557424.1  semaphorin-3D isoform X1

      UniProtKB/TrEMBL
      A0A8C0L6K6, A0A8C0MNW5, A0A8C0N1G0, A0A8I3Q2U6
      Conserved Domains (3) summary
      cd11252
      Location:61 → 534
      Sema_3D; The Sema domain, a protein interacting module, of semaphorin 3D (Sema3D)
      smart00423
      Location:533 → 570
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd05871
      Location:595 → 686
      Ig_Sema3; Immunoglobulin (Ig)-like domain of class III semaphorin Sema3
    Nucleotide Protein
    Heading Accession and Version

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