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    D1U83_gp1 polyprotein [ Cardamom mosaic virus ]

    Gene ID: 37620444, updated on 18-Aug-2023

    Summary

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    Gene symbol
    D1U83_gp1
    Gene description
    polyprotein
    Locus tag
    D1U83_gp1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Cardamom mosaic virus (isolate: KS, nat-host: Elettaria cardamomum)
    Lineage
    Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae; Macluravirus
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    Genomic context

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    Sequence:
    NC_039088.1 (105..8015)

    NC_039088.1Genomic Context describing neighboring genes

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_039088.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    polyprotein
    Names
    HC-Pro
    P3
    7K
    CI
    9K
    VPg
    NIa protease
    NIb
    CP

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_039088.1 Reference assembly

      Range
      105..8015
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_009508901.1 polyprotein [Cardamom mosaic virus]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A2D1P871
      Conserved Domains (6) summary
      pfam00767
      Location:2412 → 2629
      Poty_coat; Potyvirus coat protein
      pfam00851
      Location:142 → 262
      Peptidase_C6; Helper component proteinase
      pfam00863
      Location:1570 → 1769
      Peptidase_C4; Peptidase family C4
      pfam08440
      Location:1024 → 1262
      Poty_PP; Potyviridae polyprotein
      cl02808
      Location:1857 → 2264
      RT_like; Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, retroviruses, group ...
      cl27160
      Location:630 → 1015
      HA2; Helicase associated domain (HA2)

    2. YP_009509108.1 HC-Pro

      Conserved Domains (1) summary
      pfam00851
      Location:142 → 262
      Peptidase_C6; Helper component proteinase

    3. YP_009509109.1 P3

    4. YP_009509110.1 7K

    5. YP_009509111.1 CI

      Conserved Domains (2) summary
      pfam08440
      Location:394 → 632
      Poty_PP; Potyviridae polyprotein
      cl27160
      Location:1 → 385
      HA2; Helicase associated domain (HA2)

    6. YP_009509112.1 9K

      Conserved Domains (1) summary
      COG3540
      Location:45 → 70
      PhoD; Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]

    7. YP_009509113.1 VPg

    8. YP_009509114.1 NIa protease

      Conserved Domains (1) summary
      pfam00863
      Location:25 → 180
      Peptidase_C4; Peptidase family C4

    9. YP_009509115.1 NIb

      Conserved Domains (1) summary
      cl02808
      Location:95 → 502
      RT_like; Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, retroviruses, group ...

    10. YP_009509116.1 CP

      UniProtKB/TrEMBL
      J9QCM6
      Conserved Domains (1) summary
      pfam00767
      Location:84 → 301
      Poty_coat; Potyvirus coat protein
    Nucleotide Protein
    Heading Accession and Version

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