U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    LOC108627955 ATP-dependent helicase brm [ Ceratina calcarata ]

    Gene ID: 108627955, updated on 1-Aug-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC108627955
    Gene description
    ATP-dependent helicase brm
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ceratina calcarata
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Ceratina; Zadontomerus
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC108627955 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    101 current ASM165200v1 (GCF_001652005.1) Unplaced Scaffold NW_017172448.1 (7389..30659, complement)

    NW_017172448.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113464703 Neighboring gene uncharacterized LOC108627954 Neighboring gene notchless protein homolog 1 Neighboring gene inositol monophosphatase 2-like Neighboring gene inositol monophosphatase 2-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_017172448 Unplaced Scaffold Reference ASM165200v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription factor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    ATP-dependent helicase brm

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Ceratina calcarata Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM165200v1

    Genomic

    1. NW_017172448.1 Reference ASM165200v1

      Range
      7389..30659 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018029573.2 → XP_017885062.2  ATP-dependent helicase brm isoform X2

      UniProtKB/TrEMBL
      A0AAJ7N9Z7
      Conserved Domains (10) summary
      pfam01391
      Location:602 → 657
      Collagen; Collagen triple helix repeat (20 copies)
      smart00573
      Location:957 → 1029
      HSA; domain in helicases and associated with SANT domains
      pfam07533
      Location:1103 → 1141
      BRK; BRK domain
      pfam08880
      Location:760 → 793
      QLQ
      pfam09606
      Location:174 → 614
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam14619
      Location:1759 → 1827
      SnAC; Snf2-ATP coupling, chromatin remodelling complex
      cl02556
      Location:1878 → 1985
      Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
      cl25742
      Location:894 → 1076
      ERM; Ezrin/radixin/moesin family
      cl26464
      Location:4 → 293
      Atrophin-1; Atrophin-1 family
      cl26465
      Location:1165 → 1749
      SNF2_N; SNF2 family N-terminal domain

    2. XM_026816087.1 → XP_026671888.1  ATP-dependent helicase brm isoform X1

      UniProtKB/TrEMBL
      A0AAJ7NA27
      Conserved Domains (9) summary
      smart00573
      Location:963 → 1035
      HSA; domain in helicases and associated with SANT domains
      pfam07533
      Location:1109 → 1147
      BRK; BRK domain
      pfam08880
      Location:760 → 793
      QLQ
      pfam09606
      Location:174 → 614
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam14619
      Location:1765 → 1833
      SnAC; Snf2-ATP coupling, chromatin remodelling complex
      cl02556
      Location:1884 → 1991
      Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
      cl25742
      Location:900 → 1082
      ERM; Ezrin/radixin/moesin family
      cl26465
      Location:1171 → 1755
      SNF2_N; SNF2 family N-terminal domain
      cl27988
      Location:1 → 42
      Pox_F17; DNA-binding 11 kDa phosphoprotein

    3. XM_018029572.2 → XP_017885061.2  ATP-dependent helicase brm isoform X1

      UniProtKB/TrEMBL
      A0AAJ7NA27
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases