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    PICST_85815 component of small subunit processosome [ Scheffersomyces stipitis CBS 6054 ]

    Gene ID: 4851475, updated on 21-Dec-2023

    Summary

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    Gene symbol
    PICST_85815
    Gene description
    component of small subunit processosome
    Locus tag
    PICST_85815
    Gene type
    protein coding
    RNA name
    component of small subunit processosome
    RefSeq status
    PROVISIONAL
    Organism
    Scheffersomyces stipitis CBS 6054 (strain: CBS 6054)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Scheffersomyces
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    Genomic context

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    See PICST_85815 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_009068.1 (1918609..1924240)

    Chromosome 1 - NC_009068.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene Proline specific permease Neighboring gene hypothetical protein Neighboring gene GTP-binding protein of the rab/ypt family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009068.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis. Jeffries TW, et al. Nat Biotechnol, 2007 Mar. PMID 17334359
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables snoRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase I IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of 90S preribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of small-subunit processome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of t-UTP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    component of small subunit processosome

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_009068.1 Reference assembly

      Range
      1918609..1924240
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001387569.1 → XP_001387606.2  component of small subunit processosome [Scheffersomyces stipitis CBS 6054]

      See identical proteins and their annotated locations for XP_001387606.2

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      A3GGS6
      Conserved Domains (2) summary
      smart01036
      Location:1550 → 1702
      BP28CT; BP28CT (NUC211) domain
      pfam12397
      Location:239 → 370
      U3snoRNP10; U3 small nucleolar RNA-associated protein 10
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A3GGS6.2

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