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    SSBP3 single stranded DNA binding protein 3 [ Acinonyx jubatus (cheetah) ]

    Gene ID: 106974995, updated on 13-Mar-2024

    Summary

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    Gene symbol
    SSBP3
    Gene description
    single stranded DNA binding protein 3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Acinonyx jubatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Acinonychinae; Acinonyx
    Orthologs
    human mouse all
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    Genomic context

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    See SSBP3 in Genome Data Viewer
    Location:
    chromosome: C1
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2023_04 current VMU_Ajub_asm_v1.0 (GCF_027475565.1) C1 NC_069381.1 (43305860..43470981, complement)

    Chromosome C1 - NC_069381.1Genomic Context describing neighboring genes Neighboring gene NADH-cytochrome b5 reductase-like Neighboring gene CUB domain containing protein 2 Neighboring gene mitochondrial ribosomal protein L37 Neighboring gene uncharacterized LOC113599348 Neighboring gene acyl-CoA thioesterase 11 Neighboring gene family with sequence similarity 151 member A

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_069381.1 Chromosome C1 Reference VMU_Ajub_asm_v1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables single-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    single-stranded DNA-binding protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_027475565.1-RS_2023_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference VMU_Ajub_asm_v1.0

    Genomic

    1. NC_069381.1 Reference VMU_Ajub_asm_v1.0

      Range
      43305860..43470981 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_053214078.1 → XP_053070053.1  single-stranded DNA-binding protein 3 isoform X6

    2. XM_027059110.2 → XP_026914911.1  single-stranded DNA-binding protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A6J1ZCB2
      Conserved Domains (2) summary
      smart00667
      Location:17 → 43
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:81 → 373
      SSDP; Single-stranded DNA binding protein, SSDP

    3. XM_027059112.2 → XP_026914913.1  single-stranded DNA-binding protein 3 isoform X3

      UniProtKB/TrEMBL
      A0A6J1ZCY8
      Conserved Domains (2) summary
      smart00667
      Location:17 → 43
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:81 → 346
      SSDP; Single-stranded DNA binding protein, SSDP

    4. XM_027059111.2 → XP_026914912.1  single-stranded DNA-binding protein 3 isoform X2

      UniProtKB/TrEMBL
      A0A6J1ZBJ1
      Conserved Domains (2) summary
      smart00667
      Location:17 → 43
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:81 → 365
      SSDP; Single-stranded DNA binding protein, SSDP

    5. XM_053214079.1 → XP_053070054.1  single-stranded DNA-binding protein 3 isoform X7

    6. XM_027059113.2 → XP_026914914.1  single-stranded DNA-binding protein 3 isoform X4

      UniProtKB/TrEMBL
      A0A6J1ZDU7
      Conserved Domains (2) summary
      smart00667
      Location:17 → 43
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:81 → 338
      SSDP; Single-stranded DNA binding protein, SSDP

    7. XM_053214080.1 → XP_053070055.1  single-stranded DNA-binding protein 3 isoform X8

    8. XM_027059114.2 → XP_026914915.1  single-stranded DNA-binding protein 3 isoform X5

      UniProtKB/TrEMBL
      A0A6J1ZF01
      Conserved Domains (1) summary
      pfam04503
      Location:47 → 328
      SSDP; Single-stranded DNA binding protein, SSDP

    9. XM_053214081.1 → XP_053070056.1  single-stranded DNA-binding protein 3 isoform X9

    10. XM_053214083.1 → XP_053070058.1  single-stranded DNA-binding protein 3 isoform X10

    11. XM_053214082.1 → XP_053070057.1  single-stranded DNA-binding protein 3 isoform X9

    12. XM_053214084.1 → XP_053070059.1  single-stranded DNA-binding protein 3 isoform X10

    Nucleotide Protein
    Heading Accession and Version

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