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    PRPF4 pre-mRNA splicing tri-snRNP complex factor PRPF4 [ Acinonyx jubatus (cheetah) ]

    Gene ID: 106978338, updated on 13-Mar-2024

    Summary

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    Gene symbol
    PRPF4
    Gene description
    pre-mRNA splicing tri-snRNP complex factor PRPF4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Acinonyx jubatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Acinonychinae; Acinonyx
    Orthologs
    human mouse all
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    Genomic context

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    See PRPF4 in Genome Data Viewer
    Location:
    chromosome: D4
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2023_04 current VMU_Ajub_asm_v1.0 (GCF_027475565.1) D4 NC_069391.1 (20771740..20796999, complement)

    Chromosome D4 - NC_069391.1Genomic Context describing neighboring genes Neighboring gene B-box and SPRY domain containing Neighboring gene haloacid dehalogenase like hydrolase domain containing 3 Neighboring gene WD repeat domain 31 Neighboring gene ring finger protein 183 Neighboring gene cell division cycle 26 Neighboring gene solute carrier family 31 member 1 Neighboring gene FKBP prolyl isomerase family member 15

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_069391.1 Chromosome D4 Reference VMU_Ajub_asm_v1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables U4 snRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables U6 snRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U4/U6 x U5 tri-snRNP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U4/U6 small nuclear ribonucleoprotein Prp4
    Names
    pre-mRNA processing factor 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_027475565.1-RS_2023_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference VMU_Ajub_asm_v1.0

    Genomic

    1. NC_069391.1 Reference VMU_Ajub_asm_v1.0

      Range
      20771740..20796999 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015076015.3 → XP_014931501.1  U4/U6 small nuclear ribonucleoprotein Prp4 isoform X1

      UniProtKB/TrEMBL
      A0A6I9ZYT2
      Conserved Domains (3) summary
      smart00500
      Location:103 → 141
      SFM; Splicing Factor Motif, present in Prp18 and Pr04
      cd00200
      Location:233 → 519
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:234 → 271
      7WD40; WD40 repeat [structural motif]

    2. XM_015076024.3 → XP_014931510.1  U4/U6 small nuclear ribonucleoprotein Prp4 isoform X2

      UniProtKB/TrEMBL
      A0A6I9ZXR4
      Conserved Domains (3) summary
      smart00500
      Location:102 → 140
      SFM; Splicing Factor Motif, present in Prp18 and Pr04
      cd00200
      Location:232 → 518
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:233 → 270
      7WD40; WD40 repeat [structural motif]

    3. XM_027034866.2 → XP_026890667.1  U4/U6 small nuclear ribonucleoprotein Prp4 isoform X3

      UniProtKB/TrEMBL
      A0A6J1XDU7
      Conserved Domains (2) summary
      cd00200
      Location:8 → 276
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:42 → 78
      7WD40; WD40 repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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