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    LOC113857941 E3 ubiquitin-protein ligase UPL1-like [ Abrus precatorius (Indian licorice) ]

    Gene ID: 113857941, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC113857941
    Gene description
    E3 ubiquitin-protein ligase UPL1-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Abrus precatorius
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus
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    Genomic context

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    See LOC113857941 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    100 current Abrus_2018 (GCF_003935025.1) Unplaced Scaffold NW_020874362.1 (37234046..37251236)

    NW_020874362.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113859980 Neighboring gene 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic Neighboring gene U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase Neighboring gene glycine-rich RNA-binding protein 4, mitochondrial Neighboring gene polygalacturonase At1g48100-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_020874362 Unplaced Scaffold Reference Abrus_2018

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein polyubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase UPL1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Abrus precatorius Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Abrus_2018

    Genomic

    1. NW_020874362.1 Reference Abrus_2018

      Range
      37234046..37251236
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_027490275.1 → XP_027346076.1  E3 ubiquitin-protein ligase UPL1-like isoform X1

      UniProtKB/TrEMBL
      A0A8B8KQD4

    2. XM_027490277.1 → XP_027346078.1  E3 ubiquitin-protein ligase UPL1-like isoform X3

      UniProtKB/TrEMBL
      A0A8B8KRX6

    3. XM_027490276.1 → XP_027346077.1  E3 ubiquitin-protein ligase UPL1-like isoform X2

      UniProtKB/TrEMBL
      A0A8B8KQD8
    Nucleotide Protein
    Heading Accession and Version

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