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    Tnr tenascin R [ Mus caroli (Ryukyu mouse) ]

    Gene ID: 110293177, updated on 15-Mar-2024

    Summary

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    Gene symbol
    Tnr
    Gene description
    tenascin R
    See related
    Ensembl:MGP_CAROLIEiJ_G0014750
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mus caroli
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Orthologs
    human mouse all
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    Genomic context

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    See Tnr in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    101 current CAROLI_EIJ_v1.1 (GCF_900094665.1) 1 NC_034570.1 (150159403..150569700)

    Chromosome 1 - NC_034570.1Genomic Context describing neighboring genes Neighboring gene COP1 E3 ubiquitin ligase Neighboring gene small Cajal body-specific RNA 3 Neighboring gene coiled-coil domain-containing protein 115 pseudogene Neighboring gene small nucleolar RNA SNORA17 Neighboring gene uncharacterized LOC110297398 Neighboring gene KIAA0040 ortholog

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_034570.1 Chromosome 1 Reference CAROLI_EIJ_v1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tenascin-R

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Mus caroli Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAROLI_EIJ_v1.1 Primary Assembly

    Genomic

    1. NC_034570.1 Reference CAROLI_EIJ_v1.1 Primary Assembly

      Range
      150159403..150569700
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029479707.1 → XP_029335567.1  tenascin-R isoform X1

      UniProtKB/TrEMBL
      A0A6P7R4Q7
      Conserved Domains (6) summary
      smart00186
      Location:1134 → 1343
      FBG; Fibrinogen-related domains (FReDs)
      cd00063
      Location:1042 → 1127
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam07974
      Location:299 → 323
      EGF_2; EGF-like domain
      pfam00041
      Location:865 → 944
      fn3; Fibronectin type III domain
      pfam18372
      Location:173 → 194
      I-EGF_1; Integrin beta epidermal growth factor like domain 1
      pfam18720
      Location:203 → 231
      EGF_Tenascin; Tenascin EGF domain

    2. XM_021160989.2 → XP_021016648.1  tenascin-R isoform X1

      UniProtKB/TrEMBL
      A0A6P7R4Q7
      Related
      MGP_CAROLIEiJ_P0020645, MGP_CAROLIEiJ_T0020645.1
      Conserved Domains (6) summary
      smart00186
      Location:1134 → 1343
      FBG; Fibrinogen-related domains (FReDs)
      cd00063
      Location:1042 → 1127
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam07974
      Location:299 → 323
      EGF_2; EGF-like domain
      pfam00041
      Location:865 → 944
      fn3; Fibronectin type III domain
      pfam18372
      Location:173 → 194
      I-EGF_1; Integrin beta epidermal growth factor like domain 1
      pfam18720
      Location:203 → 231
      EGF_Tenascin; Tenascin EGF domain

    3. XM_029479724.1 → XP_029335584.1  tenascin-R isoform X2

      UniProtKB/TrEMBL
      A0A6P7R815

    4. XM_029479714.1 → XP_029335574.1  tenascin-R isoform X1

      UniProtKB/TrEMBL
      A0A6P7R4Q7
      Related
      MGP_CAROLIEiJ_P0020647, MGP_CAROLIEiJ_T0020647.1
      Conserved Domains (6) summary
      smart00186
      Location:1134 → 1343
      FBG; Fibrinogen-related domains (FReDs)
      cd00063
      Location:1042 → 1127
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam07974
      Location:299 → 323
      EGF_2; EGF-like domain
      pfam00041
      Location:865 → 944
      fn3; Fibronectin type III domain
      pfam18372
      Location:173 → 194
      I-EGF_1; Integrin beta epidermal growth factor like domain 1
      pfam18720
      Location:203 → 231
      EGF_Tenascin; Tenascin EGF domain

    5. XM_021160996.2 → XP_021016655.1  tenascin-R isoform X1

      UniProtKB/TrEMBL
      A0A6P7R4Q7
      Conserved Domains (6) summary
      smart00186
      Location:1134 → 1343
      FBG; Fibrinogen-related domains (FReDs)
      cd00063
      Location:1042 → 1127
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam07974
      Location:299 → 323
      EGF_2; EGF-like domain
      pfam00041
      Location:865 → 944
      fn3; Fibronectin type III domain
      pfam18372
      Location:173 → 194
      I-EGF_1; Integrin beta epidermal growth factor like domain 1
      pfam18720
      Location:203 → 231
      EGF_Tenascin; Tenascin EGF domain

    6. XM_021161007.2 → XP_021016666.1  tenascin-R isoform X3

      UniProtKB/TrEMBL
      A0A6P5PS66
      Conserved Domains (3) summary
      smart00186
      Location:801 → 1010
      FBG; Fibrinogen-related domains (FReDs)
      cd00063
      Location:709 → 794
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:532 → 611
      fn3; Fibronectin type III domain
    Nucleotide Protein
    Heading Accession and Version

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