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    Lamtor5 late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

    Gene ID: 103747814, updated on 11-Mar-2024

    Summary

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    Gene symbol
    Lamtor5
    Gene description
    late endosomal/lysosomal adaptor, MAPK and MTOR activator 5
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Nannospalax galili
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
    Orthologs
    human mouse all
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    Genomic context

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    See Lamtor5 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008353126.1 (1309795..1325812)

    NW_008353126.1Genomic Context describing neighboring genes Neighboring gene tubulin alpha-1A chain-like Neighboring gene prokineticin 1 Neighboring gene potassium voltage-gated channel subfamily A member 10 Neighboring gene solute carrier family 16 member 4 Neighboring gene RNA binding motif protein 15

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_008353126 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables guanyl-nucleotide exchange factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to amino acid stimulus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of cysteine-type endopeptidase activity involved in apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of TORC1 signaling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Ragulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in lysosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ragulator complex protein LAMTOR5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference S.galili_v1.0 Primary Assembly

    Genomic

    1. NW_008353126.1 Reference S.galili_v1.0 Primary Assembly

      Range
      1309795..1325812
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008850354.3 → XP_008848576.2  ragulator complex protein LAMTOR5

      Conserved Domains (1) summary
      pfam16672
      Location:86 → 173
      LAMTOR5; Ragulator complex protein LAMTOR5
    Nucleotide Protein
    Heading Accession and Version

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